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SCNpilot_cont_300_bf_scaffold_190_curated_38

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 36663..37709

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoS n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9X0_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 87.1
  • Coverage: 348.0
  • Bit_score: 587
  • Evalue 6.50e-165
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.9
  • Coverage: 348.0
  • Bit_score: 591
  • Evalue 8.20e-166
RNA polymerase, sigma 70 family subunit; K03087 RNA polymerase nonessential primary-like sigma factor similarity KEGG
DB: KEGG
  • Identity: 87.1
  • Coverage: 348.0
  • Bit_score: 587
  • Evalue 2.00e-165

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1047
ATGGCTGCCTCCCGCCCCCGCCGCACGCCGACCGTGCGCGGGTCGGTGGGCAAGGGCAGCGTGCTTCCGCCTTCTTCGGGCGATGCCGACGAGAACCCCGAACAAAACTTTCCTTCGCTAGAAGCCGCGGCAGACGCTCTTGCTGCGAACGCCGCGCTGCCCAATGGCGCGATGGCCGAGTTGATCGGCGGGGAGGGCGCCGATGCCCTCACCATCTACCTGCGCCAGGTGCGGCGCACGGAGCTTTTCACCCCCGCAGAGGAATACCAGGCCGCATGCGCCGCGCGGGCTGGCGACTTTGCCGCAAGGCAGTCGATGATCGAGCACAACCTGCGGCTCGTCGTGAGCATCGCCAAGGGCTACCTTGGGCGCGGCGTGCCGATGTCCGACCTGATCGAAGAGGGCAACCTGGGGCTGATGCATGCCATCACCAAGTTCGAACCCGAGCGCGGCTTTCGCTTCTCGACCTACGCGACCTGGTGGATCCGCCAGTCGGTCGAGCGCGCGGTCATGACACAGGCGCGGGCGATTCGTCTGCCGGTGCATGTGGTGCGGGAGCTTCAGCAAGTGCTGCGTGCCCGGCGCACGCTCGAAGGCGATGCCGAATTCCTTGCCCACCGGCCCGACGGCGTGCGCGTGGAGGACATTGCTGCGTTGCTGGGGCGTGACGTTCAGGCGGTGGCCGATCTGCTGGCATTGGCCGAGGCGCCGCGCTCGCTCGATGCGGGCGATGCGCGCGGCGACGACGGCTTCACGCTGGCAGACACCGTGGCCTCCGATGACGAGCAAAGCAGCCCCAGCGGCGCCACGCACGCGCACGAGGTGGAACGCCTGCTCGACCAGTGGGTGCATGCGCTCGACGCACGCGAGCGCGAGGTGCTTGAAGGCCGCTACGGGCTGCACGACCGCGAACCCGAAACCCTCGAGGTGCTGAGCGTCCGGCTCGGTCTCACGCGGGAGCGGGTCAGGCAGATCCAGAACGAAGCGCTGGCCAAGATGCGGCGTCAGCTGGCGCGTTCCGGCGTCGGGAGGGACGCGCTGTTCTAG
PROTEIN sequence
Length: 349
MAASRPRRTPTVRGSVGKGSVLPPSSGDADENPEQNFPSLEAAADALAANAALPNGAMAELIGGEGADALTIYLRQVRRTELFTPAEEYQAACAARAGDFAARQSMIEHNLRLVVSIAKGYLGRGVPMSDLIEEGNLGLMHAITKFEPERGFRFSTYATWWIRQSVERAVMTQARAIRLPVHVVRELQQVLRARRTLEGDAEFLAHRPDGVRVEDIAALLGRDVQAVADLLALAEAPRSLDAGDARGDDGFTLADTVASDDEQSSPSGATHAHEVERLLDQWVHALDAREREVLEGRYGLHDREPETLEVLSVRLGLTRERVRQIQNEALAKMRRQLARSGVGRDALF*