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SCNpilot_cont_300_bf_scaffold_190_curated_17

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 17375..18052

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000369BE4A similarity UNIREF
DB: UNIREF100
  • Identity: 83.9
  • Coverage: 211.0
  • Bit_score: 355
  • Evalue 4.60e-95
TetR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 78.9
  • Coverage: 218.0
  • Bit_score: 336
  • Evalue 5.30e-90
Regulatory protein TetR {ECO:0000313|EMBL:ADU36161.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.9
  • Coverage: 218.0
  • Bit_score: 336
  • Evalue 2.40e-89

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 678
ATGGCGAAGAGCGGCACGGCCGCCATCCCGGCATCTCCTTCTCCTGCATCGCCGGAGGGCGAGGCCGCGCCGCGCCGCCGCACCAAGGCACCCGAGACCCGCGCTCCCGCGCTGATGGACGCCGCCGAGCGGCTTTTCATCGAGAAAGGCATCGCCGCCACCAGCATCGACGACGTCGCGGCCGGCGCGCAGGTGGCCAAAGGCACCTTCTATCTGTACTTTCCGTCGAAGGAGGCGCTGCTCGGCGCGCTGCAGCAGCGCTTCGTCGACAACTTCTGCGCGCGGCTGCAGGAGGCCGTCGACCGGCACCGCCCCGACAACCACCGCGCCCGCCTCAAGGCCTGGACCGAGACGGGGCTGCAGACCTACCTGGACAACGTCGCGCTGCACGACGTCGTTTTCCACGAGTACCGGCCCGAAGACCGGCGCATGCGCAACGACAACGCCGTCATCACGCAACTGGTCGCCTTGCTGAGGCGGGGTGCCGACGCCAAGGTGTGGGCGGTGGCCGACGCGACCATGACGGCCGTGATTCTGTTCAACGCGCTGCACGGCGTGGCCGACGATGCGGTGGCCATGGGCCAGACCGGCGAGGCCGACCGCAAGCGCCGCGCGCGGGCGCTCGTCGACTTCTTCGAGCGGGCGCTGCGCCCGTTCGAGGACGATAGCGCCGCCTGA
PROTEIN sequence
Length: 226
MAKSGTAAIPASPSPASPEGEAAPRRRTKAPETRAPALMDAAERLFIEKGIAATSIDDVAAGAQVAKGTFYLYFPSKEALLGALQQRFVDNFCARLQEAVDRHRPDNHRARLKAWTETGLQTYLDNVALHDVVFHEYRPEDRRMRNDNAVITQLVALLRRGADAKVWAVADATMTAVILFNALHGVADDAVAMGQTGEADRKRRARALVDFFERALRPFEDDSAA*