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SCNpilot_cont_300_bf_scaffold_53_curated_7

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 6132..7931

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.7
  • Coverage: 613.0
  • Bit_score: 982
  • Evalue 3.70e-283
pseudouridine synthase; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] similarity KEGG
DB: KEGG
  • Identity: 79.8
  • Coverage: 620.0
  • Bit_score: 905
  • Evalue 7.60e-261
Pseudouridine synthase n=1 Tax=Variovorax sp. CF313 RepID=J2KIC2_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 84.7
  • Coverage: 613.0
  • Bit_score: 982
  • Evalue 2.70e-283

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1800
ATGAGCCCATCCGACACCGACGACGCGGCAATGCTGCCGGCCGAGCCCGAAGTCAAGAAGAAGAAAAGGGCGGCTGCGCCCAAGAAGGCCGCGGTCGCCGCTGCCGAGTCGGTTGCGCCGGAGGCTGTGTCCGAAGTGTCCGCTGCGCCGGCTGAGGCCGAAGCGCCCAAGAAGCCGCGCGCGCCTCGCAAGAAGAAAGTCGTGGAGCCGGCGGAGCAGCCTGTGTCCGAAGAGGTTCTGCAGCCCGTGGCTGACGCTGCGCCCGTGGCCGAAGTGGTGGAGGCGCCCGAGCCGGTGACTGCTGTCGCTGTCGACGCGCCGGAAGCTGTTGCCACCGAACCCGAGCCAGCCGAGCCGGCTCGCGATTACAGCGAAGAACAAGACGAAGACGAGGAAGAGGAAGAGCCTGACGAGGAAGAGGACGACCTCGACCGCGCCCGTCGCGCCGCCGAGCGCGAACAGCGCAATGCGCTGCCGCCCGAGCCGATCCGCTTCGCCGACGTCATTTCCGGCCAGTTCGACGCCGACGAGGAAAGCCCCGAGGTGCCGCCGCTCAAGCGCGTGCTGCTGCCCGAGGCCGACTCGCCCAAGCTGCACAAGGTGCTGGCGCAGGCGGGCCTGGGTTCGCGGCTCGAAATGGAGCAGCTGATTCTCCAGGGGCGCATTTCCGTCAACAACGAGCCGGCCCACATCGGTCAGCGCATCCAGTACGGCGATCAGGTCAAGATCAATGGCAAGCCGATCCGCTACCGCATCGCGCCGCCGCCGCCGCGCGTCATCGCCTACCACAAGCCCACCGGCGAAGTGGTCACGCATGACGACCCGCAGAACCGGCCCACCGTGTTCCGCAAGCTGCCGCGCCTGCAGCAGGGCAAGTGGCAATCGGTCGGCCGGCTCGACCTGAACACCGAAGGCCTGCTGCTGTTCAGCAGCTCCGGCGATCTGGCCAACCAGCTGATGCACCCGCGCTTCGGCCTGGAGCGCGAGTACGCGGTGCGCGTGCTGGGCGCGCTCACCAGCGAAGAAAAGCAGAAGCTGCTCGACGGGGTGCGCCTGGACGACGGCATGGCCCAGTTCGGCACCATCGAAGACGGCGGCGGCGAAGGCTCGAACTGCTGGTATCGCGTGACGATTTCCGAAGGCCGCAACCGCGAGGTGCGCCGCCTGTTCGAGTCGGTCGGCCATGCGGTCAGCCGGCTGATCCGCATCCGCTACGGCGCGATGGTGTTGCCGCGCGGCCTGAAGCGCGGCGCCTGGATGGAGCTCGACGAGCGCGACATCCGTGCGCTGTTCCAGGCTTCCGGCGGCGCTGCTGCTCGCCCCGGCCCGCAGCAGCGCGGCCCCGGTCAGGACGGTGGCGGCAATGGTCGCAACGGACGCAACAAGAAGCGCCGCGGCAACCGCAACGGCGGTGGCCAGGGTGGTGGCCAGCCGCGCGAGATGCGCGACGACGGCGGCCGTGGCGAGGCGCCGATCCCGAATCCGCTGGGCGACGGCCGTCCGCCGCGCGGCGACCGCGGCCCACGCCCCAATCGGGGTGGTGGCAACGGTGGCAACGGTGGTCAGCCGCAAGGCCAGGGGCGTCGCGGCAAGGGCGGCGGCAATCGCCAGGGTGACGACCGTCAGCCCAGCGGTGCCAACCAGCCCGATCCGATGAAGACCTCGCTCGGCTACATCGGCGCCGACAGCTTCTCGCGCCAGCGCAAGGAGCAGCGCGGAGGCCCCGGCCGCCGTGGCGGCGGAGGCGGTGGTGGAAGCGGCTTCGGCAACTCGGGCGGCGGACGTCGCCGCGGTCGCTGA
PROTEIN sequence
Length: 600
MSPSDTDDAAMLPAEPEVKKKKRAAAPKKAAVAAAESVAPEAVSEVSAAPAEAEAPKKPRAPRKKKVVEPAEQPVSEEVLQPVADAAPVAEVVEAPEPVTAVAVDAPEAVATEPEPAEPARDYSEEQDEDEEEEEPDEEEDDLDRARRAAEREQRNALPPEPIRFADVISGQFDADEESPEVPPLKRVLLPEADSPKLHKVLAQAGLGSRLEMEQLILQGRISVNNEPAHIGQRIQYGDQVKINGKPIRYRIAPPPPRVIAYHKPTGEVVTHDDPQNRPTVFRKLPRLQQGKWQSVGRLDLNTEGLLLFSSSGDLANQLMHPRFGLEREYAVRVLGALTSEEKQKLLDGVRLDDGMAQFGTIEDGGGEGSNCWYRVTISEGRNREVRRLFESVGHAVSRLIRIRYGAMVLPRGLKRGAWMELDERDIRALFQASGGAAARPGPQQRGPGQDGGGNGRNGRNKKRRGNRNGGGQGGGQPREMRDDGGRGEAPIPNPLGDGRPPRGDRGPRPNRGGGNGGNGGQPQGQGRRGKGGGNRQGDDRQPSGANQPDPMKTSLGYIGADSFSRQRKEQRGGPGRRGGGGGGGSGFGNSGGGRRRGR*