name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_cont_300_bf_scaffold_53_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9..302)
|
Transposase, IS4 family n=1 Tax=Variovorax paradoxus B4 RepID=T1XFH3_VARPD
transposase, IS4 family
Transposase, IS4 family {ECO:0000313|EMBL:AGU51318.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
844..1155
|
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0V1_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU37897.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1152..3242
|
helicase c2; K03722 ATP-dependent DNA helicase DinG [EC:3.6.4.12]
DNA helicase, Rad3 n=1 Tax=Variovorax sp. CF313 RepID=J3CWY9_9BURK
DNA helicase, Rad3 {ECO:0000313|EMBL:EJL79946.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3283..4089)
|
Outer membrane protein assembly factor BamD n=1 Tax=Variovorax sp. CF313 RepID=J2TMS4_9BURK
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
yfiO; putative outer membrane assembly lipoprotein YfiO
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4140..5138
|
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
RluA family pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Pseudouridine synthase n=1 Tax=Variovorax sp. CF313 RepID=J2L3X6_9BURK
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5269..6135
|
Segregation and condensation protein B n=1 Tax=Variovorax sp. CF313 RepID=J3CWJ3_9BURK
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
chromosome segregation and condensation protein ScpB; K06024 segregation and condensation protein B
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6132..7931
|
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
pseudouridine synthase; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Pseudouridine synthase n=1 Tax=Variovorax sp. CF313 RepID=J2KIC2_9BURK
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8084..8509
|
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
nucleoside diphosphate kinase n=1 Tax=Variovorax paradoxus RepID=UPI00036E2D40
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8531..9679
|
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1
Cfr family radical SAM protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Variovorax sp. CF313 RepID=J2TMT0_9BURK
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9684..10538
|
Type IV pilus biogenesis/stability protein PilW n=1 Tax=Variovorax sp. CF313 RepID=J2L3Y1_9BURK
Type IV pilus biogenesis/stability protein PilW {ECO:0000313|EMBL:EJL79953.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
pilW1; type IV pilus biogenesis/stability protein PilW
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10531..11496
|
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CWJ7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79954.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K15539 cytoskeleton protein RodZ
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11493..12767
|
1-hydroxy-2-methyL-2-(e)-butenyl 4-diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1]
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0U1_VARPE
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12784..14094
|
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
Histidine--tRNA ligase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0U0_VARPE
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14100..14792
|
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0T9_VARPE
Variovorax paradoxus strain MEDvA23 contig_52, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27857.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14800..15942
|
Outer membrane protein assembly factor BamB n=1 Tax=Variovorax sp. CF313 RepID=J2L3Y8_9BURK
Outer membrane protein assembly factor BamB {ECO:0000256|HAMAP-Rule:MF_00923}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
outer membrane assembly lipoprotein yfgl
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15994..17337
|
GTPase Der n=1 Tax=Variovorax sp. CF313 RepID=J3CWK0_9BURK
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ribosome-associated GTPase enga; K03977 GTP-binding protein
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17501..17746
|
RNA-binding protein Hfq n=3 Tax=Variovorax paradoxus RepID=HFQ_VARPS
RNA chaperone Hfq; K03666 host factor-I protein
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17802..18971
|
GTPase HflX n=1 Tax=Variovorax sp. CF313 RepID=J3CWZ8_9BURK
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
GTP-binding proten hflx; K03665 GTP-binding protein HflX
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19046..20419
|
hflk protein; K04088 membrane protease subunit HflK [EC:3.4.-.-]
HflK protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0T4_VARPE
Variovorax paradoxus strain MEDvA23 contig_52, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27860.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20437..21336
|
hflc protein; K04087 membrane protease subunit HflC [EC:3.4.-.-]
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI000379B717
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21586..22746
|
ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Variovorax sp. CF313 RepID=J3CWK4_9BURK
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
histidyL-tRNA synthetase 2; K02502 ATP phosphoribosyltransferase regulatory subunit
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22770..24101
|
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
adenylosuccinate synthetase n=1 Tax=Variovorax paradoxus RepID=UPI00036C1D37
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24123..24647
|
Phosphoribosyltransferase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0S9_VARPE
phosphoribosyltransferase; K07101
Phosphoribosyltransferase {ECO:0000313|EMBL:ADU37875.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24666..25118)
|
glyxoylase n=1 Tax=Variovorax paradoxus RepID=UPI000368C410
Uncharacterized protein {ECO:0000313|EMBL:EJL79967.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
glyoxalase/bleomycin resistance protein/dioxygenase
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25172..26038)
|
Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0S7_VARPE
Variovorax paradoxus strain MEDvA23 contig_52, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27867.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
AraC family transcriptional regulator
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_26
Thauera aminoaromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26119..28452)
|
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00036A9882
von Willebrand factor type A {ECO:0000313|EMBL:ENO86790.1}; TaxID=1234381 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera aminoaromatica S2.;"
von Willebrand factor type A; K07114 uncharacterized protein
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_27
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28474..28914)
|
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00036BA7AC
MerR HTH regulatory family protein {ECO:0000313|EMBL:KIN90218.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
MerR family transcriptional regulator
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
28968..30188
|
cys/met metabolism pyridoxaL-phosphate-dependent protein; K01760 cystathionine beta-lyase [EC:4.4.1.8]
Cys/Met metabolism pyridoxal-phosphate-dependent protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0S5_VARPE
Cys/Met metabolism pyridoxal-phosphate-dependent protein {ECO:0000313|EMBL:ADU37871.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
30303..30506
|
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KIE5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79970.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
|
|
SCNpilot_cont_300_bf_scaffold_53_curated_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(30565..31203)
|
arylesterase n=1 Tax=Variovorax paradoxus RepID=UPI0003816F58
Variovorax paradoxus strain MEDvA23 contig_52, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27871.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
GDSL-like lipase/acylhydrolase family protein
|