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SCNpilot_cont_300_bf_scaffold_53_curated

Search features with annotation key words

Displaying items 31-60 of 421 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_53_curated_31
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31240..31950
DNA (711bp) protein (237aa)
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component n=1 Tax=Variovorax sp. CF313 RepID=J2TMV0_9BURK
Variovorax paradoxus strain MEDvA23 contig_52, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27872.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ABC transporter; K02003 putative ABC transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_53_curated_32
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32019..32498
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000367FA70
Ribosomal protein L7/L12 {ECO:0000313|EMBL:EJL79973.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_53_curated_33
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32503..33483
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000375484F
Uncharacterized protein {ECO:0000313|EMBL:EJL79974.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_53_curated_34
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33517..34263
DNA (747bp) protein (249aa)
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB {ECO:0000256|HAMAP-Rule:MF_01887}; EC=2.1.1.185 {ECO:0000256|HAMAP-Rule:MF_01887};; 23S rRNA (guanosine2251 2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; 23S rRNA Gm2251 2'-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (EC:2.1.1.-)
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB n=1 Tax=Variovorax sp. CF313 RepID=J2KIF1_9BURK
SCNpilot_cont_300_bf_scaffold_53_curated_35
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34271..35296)
DNA (1026bp) protein (342aa)
FAD dependent oxidoreductase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZQ5_VARPE
Variovorax paradoxus strain MEDvA23 contig_52, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27918.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
fad dependent oxidoreductase
SCNpilot_cont_300_bf_scaffold_53_curated_36
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35587..35757)
DNA (171bp) protein (57aa)
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003773B78
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU37862.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_53_curated_37
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35862..36467)
DNA (606bp) protein (202aa)
transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036436EA
transcriptional regulator, XRE family
Variovorax paradoxus strain MEDvA23 contig_52, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27876.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_53_curated_38
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36511..37032
DNA (522bp) protein (174aa)
phosphinothricin acetyltransferase; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183]
Phosphinothricin acetyltransferase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZQ2_VARPE
Phosphinothricin acetyltransferase {ECO:0000313|EMBL:ADU37860.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_53_curated_39
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37040..37522)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KIF6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79980.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_53_curated_40
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37536..38504)
DNA (969bp) protein (323aa)
Aldo/keto reductase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZQ0_VARPE
Variovorax paradoxus strain MEDvA23 contig_52, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27879.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
aldo/keto reductase
SCNpilot_cont_300_bf_scaffold_53_curated_41
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38543..39142)
DNA (600bp) protein (200aa)
Chromate transporter n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZP9_VARPE
chromate transporter; K07240 chromate transporter
Chromate transporter {ECO:0000313|EMBL:ADU37857.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_53_curated_42
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39139..39705)
DNA (567bp) protein (189aa)
Chromate transport protein ChrA n=1 Tax=Variovorax sp. CF313 RepID=J2L416_9BURK
Chromate transport protein ChrA {ECO:0000313|EMBL:EJL79983.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Chromate transporter; K07240 chromate transporter
SCNpilot_cont_300_bf_scaffold_53_curated_43
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39792..40715
DNA (924bp) protein (308aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00035F6F20
ribonuclease bn; K07058 membrane protein
Ribonuclease BN {ECO:0000313|EMBL:ADU37855.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_53_curated_44
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40731..41291)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KIG2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79985.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_53_curated_45
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41409..41858
DNA (450bp) protein (150aa)
CHRD domain containing protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZP5_VARPE
chrd domain containing protein
CHRD domain containing protein {ECO:0000313|EMBL:ADU37853.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_53_curated_46
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42005..43135
DNA (1131bp) protein (377aa)
Patatin n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZP4_VARPE
patatin; K07001 NTE family protein
Patatin {ECO:0000313|EMBL:ADU37852.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_53_curated_47
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43220..43969
DNA (750bp) protein (250aa)
acetoacetate decarboxylase (EC:4.1.1.4); K01574 acetoacetate decarboxylase [EC:4.1.1.4]
Acetoacetate decarboxylase n=1 Tax=Variovorax sp. CF313 RepID=J2L421_9BURK
Acetoacetate decarboxylase {ECO:0000313|EMBL:EJL79988.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_53_curated_48
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44016..44798
DNA (783bp) protein (261aa)
3-hydroxybutyrate dehydrogenase; K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
3-hydroxybutyrate dehydrogenase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZP2_VARPE
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:ADU37850.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_53_curated_49
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44931..45872)
DNA (942bp) protein (314aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2KIG8_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL79990.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
GCN5-like N-acetyltransferaser
SCNpilot_cont_300_bf_scaffold_53_curated_50
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46029..48410
DNA (2382bp) protein (794aa)
UPF0313 protein PMI12_00348 n=1 Tax=Variovorax sp. CF313 RepID=J3CX18_9BURK
UPF0313 protein PMI12_00348 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ygiQ; putative radical SAM protein YgiQ
SCNpilot_cont_300_bf_scaffold_53_curated_51
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48477..49484)
DNA (1008bp) protein (336aa)
GGDEF domain protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8J1C9_HERSS
diguanylate cyclase
GGDEF domain protein {ECO:0000313|EMBL:ADJ64698.1}; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
SCNpilot_cont_300_bf_scaffold_53_curated_52
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49578..51545)
DNA (1968bp) protein (656aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037EA428
Diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF sensor {ECO:0000313|EMBL:EHJ99461.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
PAS/PAC and GAF sensor-containg diguanylate cyclase/phosphodiesterase
SCNpilot_cont_300_bf_scaffold_53_curated_53
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51951..52868
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037AAA2B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU37845.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_53_curated_54
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52906..53811
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2TMX2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79992.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_53_curated_55
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53827..54708)
DNA (882bp) protein (294aa)
Putative acyl-CoA transferase/carnitine dehydratase n=1 Tax=Variovorax sp. CF313 RepID=J2L425_9BURK
Putative acyl-CoA transferase/carnitine dehydratase {ECO:0000313|EMBL:EJL79993.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
L-carnitine dehydratase/bile acid-inducible protein f
SCNpilot_cont_300_bf_scaffold_53_curated_56
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54879..55781
DNA (903bp) protein (301aa)
oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI0003787EB6
Uncharacterized protein {ECO:0000313|EMBL:EJL79994.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative oxidoreductase, SDR family
SCNpilot_cont_300_bf_scaffold_53_curated_57
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55800..56258)
DNA (459bp) protein (153aa)
Transcriptional regulator, AsnC family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZN3_VARPE
AsnC family transcriptional regulator; K03719 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ADU37841.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_53_curated_58
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56382..56990
DNA (609bp) protein (203aa)
Glutathione S-transferase domain n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZN2_VARPE
glutathione s-transferase domain-containing protein
Glutathione S-transferase domain {ECO:0000313|EMBL:ADU37840.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_53_curated_59
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57004..57393)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KIH3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79995.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_53_curated_60
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57425..59302)
DNA (1878bp) protein (626aa)
Tat pathway signal protein n=1 Tax=Variovorax paradoxus RepID=UPI00036A2252
Putative phosphatase {ECO:0000313|EMBL:EJL79996.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K07093
Displaying items 31-60 of 421 in total

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