ggKbase home page

SCNpilot_cont_300_bf_scaffold_53_curated_52

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(49578..51545)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037EA428 similarity UNIREF
DB: UNIREF100
  • Identity: 52.9
  • Coverage: 643.0
  • Bit_score: 685
  • Evalue 7.30e-194
Diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF sensor {ECO:0000313|EMBL:EHJ99461.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 41.8
  • Coverage: 648.0
  • Bit_score: 497
  • Evalue 2.30e-137
PAS/PAC and GAF sensor-containg diguanylate cyclase/phosphodiesterase similarity KEGG
DB: KEGG
  • Identity: 41.8
  • Coverage: 638.0
  • Bit_score: 490
  • Evalue 8.30e-136

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Agrobacterium tumefaciens → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1968
GTGCAGGAATTCTTTATTGCTGCGTGGCGGGCTGAGTTCGCAAATTACCCCCTGCTCATCCTTCAGGCAGCCGCCCTGCTCGGGATATTGAGCATTGCCTTGCTTCTCTCCAGGACGCCGACCGAGAGATTTGAATCCAGAACACTTCTTTATGGCTGCATCTTCGGAGCCACCAGCTTTTCGCTGATCGCCCTGGCCAGTCAATTCTTCAATCTTCCTTCCAAGCCCTATCTTTCGTCCGATCTGCTCTTCCTGGGAGGCCTTTTGGGCGGATGGAAAGGAGGGGCCATCACGTTGGCAATGACCATTTTGGGGCGCCTGATATTTGGCGGTGTCAATCAAGTGGAGGCTTTTTTACTCGACATGTCGATAACGGCAGCGGGCGGTGTTGCTGCTCATTTGATTTATCGAAAAAAAGCAATCAAAGATTTTGGGTGGAGCGATGTGCTGAAAATATGGGGCACTCGCATGGCGTGCTCACTTTTTTCGAGCGCAATCATTTTTGCACTGGAATTGGTGCCTCCAAAAATAAGCATACATGTCACCACCCTGCAAATATTCGGATTCAGCACCTCGCTATTCATTCTGGGCAGCGTGATCGCCTTGCTTCGTTCCGATGCGCTGGTCAGGGAATCCTATTTTCAGCGCATGCAGATGTATCGCACCGATCTTCTGAGTGGATTGCCCAACAGGAGAGCGCTCAGCGAATACCTCGAGATACTGCTCAAGCGAGACCAGACGCAACATGTGCTTCTCACATTCGAGGTCGGAAATCTCAAGGAAATGGTCCGCACCTTGGGCCATGACTGGACGGATAAATTCTGGGGTCACCTGGCGCGTGAGTTGATGAGGCAAGAAAGCCTCAAACTGACATCCAATGGAAAATCAAAATGTTTTCAACTATCCGATCTGGCGCTGGCCTTCGTAGTCAAGGAAACTTCCGTCAAGCAGATCGAGAATTCCCAGCTCATGCCTCGGCTGTATGCCGACATCACGGAGCACCTGCAAGTCGCCGGGGGGCCTTACTCAAGTGCGCAACTGCGCTGCGGCATCACCAACGTAAGAATGGCTGGTGAGACCAACTCCTCGTCTGTTCTGAGAAACATCAGCCTGGCGCTTCAGAGCAGCAATCAGCAGATCAGATATTTTCATGACTCCTTTTCTGCCCAGGCCGACAGGGATGCCGATGTTCATGAACTGATGATCGGCTGGATACGCACCGTCAATCCGCCGATGAGCTATCAGCCAAAGTTCGACCTGGAGACCCGGCAGATTTGCGGCGCCGAGGCACTTTTAAGAGCCAATTCCGCGGAAGGAATTTCTCTCTCGCCTCTTTATGTTCTGGATGTCGCAACCCGATACCAATTGCTGCTGAAGCTGGAGTGGTGCATCGTCGAAATGGTGATCCGTGAAATCGCCAACTGCATGGCCAGCGGTTTTCATATGCCGTTGTCCGTCAACATATCGGCGGCATCCATCACCGTTCCGGGTTTGGGGGAGCGAATACTGGACCGCCTGAGCCGCTACTCTGTGCCATTCGAATTGCTATCTATAGAGATCACCGAATCCGGTCATGTGCCGGACATGGACACAGTGAGGGAAAACGTTCACAGGTTGCATTCGGCAGGCGTCGGGTTGTCGCTTGATGATTTTGGAGCCGGGTACTCCACACTCACCACGCTGGCAAAAATTCCCTTCAACGAAGTGAAAATTGACTATGCAATGGTTTCAATGATCGAGCAGCCGCGCATGAACAAAGCGATTGGCTTGGCTTTGGAGAGCGCGACGAGGTATGGCGCAACGCTCGTTGCGGAAGGTGTCGAAACCGAGGCTCAGTTGGCCATATTGATCGATATGGGTATCAAATTTGGCCAAGGCTTTCTTCTTTCCAAAGCTGTACCCATGGATGATTTGATTGAGCTGGCAAGGCGAGAGAGGGGCGAACGGCTGTATGGAGATCTGGAGTAG
PROTEIN sequence
Length: 656
VQEFFIAAWRAEFANYPLLILQAAALLGILSIALLLSRTPTERFESRTLLYGCIFGATSFSLIALASQFFNLPSKPYLSSDLLFLGGLLGGWKGGAITLAMTILGRLIFGGVNQVEAFLLDMSITAAGGVAAHLIYRKKAIKDFGWSDVLKIWGTRMACSLFSSAIIFALELVPPKISIHVTTLQIFGFSTSLFILGSVIALLRSDALVRESYFQRMQMYRTDLLSGLPNRRALSEYLEILLKRDQTQHVLLTFEVGNLKEMVRTLGHDWTDKFWGHLARELMRQESLKLTSNGKSKCFQLSDLALAFVVKETSVKQIENSQLMPRLYADITEHLQVAGGPYSSAQLRCGITNVRMAGETNSSSVLRNISLALQSSNQQIRYFHDSFSAQADRDADVHELMIGWIRTVNPPMSYQPKFDLETRQICGAEALLRANSAEGISLSPLYVLDVATRYQLLLKLEWCIVEMVIREIANCMASGFHMPLSVNISAASITVPGLGERILDRLSRYSVPFELLSIEITESGHVPDMDTVRENVHRLHSAGVGLSLDDFGAGYSTLTTLAKIPFNEVKIDYAMVSMIEQPRMNKAIGLALESATRYGATLVAEGVETEAQLAILIDMGIKFGQGFLLSKAVPMDDLIELARRERGERLYGDLE*