ggKbase home page

SCNpilot_cont_300_bf_scaffold_53_curated_51

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(48477..49484)

Top 3 Functional Annotations

Value Algorithm Source
GGDEF domain protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8J1C9_HERSS similarity UNIREF
DB: UNIREF100
  • Identity: 40.2
  • Coverage: 338.0
  • Bit_score: 254
  • Evalue 1.60e-64
diguanylate cyclase similarity KEGG
DB: KEGG
  • Identity: 40.2
  • Coverage: 338.0
  • Bit_score: 254
  • Evalue 5.20e-65
GGDEF domain protein {ECO:0000313|EMBL:ADJ64698.1}; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 40.2
  • Coverage: 338.0
  • Bit_score: 254
  • Evalue 2.30e-64

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Herbaspirillum seropedicae → Herbaspirillum → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1008
ATGAAAATTGAAGAAGTGCGCGTGAATGAATTCAGAAAGCTGATCAAGCCGCTGTCGCTTGGCATGCAGCTGGGCGGAGTCTTTTTCGTCGCGATGTCGTGGCTGCTTGCCGACGACTCTTATAAATACGACATTCGACAGATTTTACTTCTTTTGGCCTTGACCATGATCTCAATCGGTGCCAGCTGGAAAATACCGTTTTTCTCTCTATTCTCCATTACGACCGTCTGGCTGATATGCCTGGAATTTGTCTTGCTGGCGGCGCCAAGCGCCAATCGAGATTATTGGATGACGGCATTGAGCATTGGAATATCTTTGGCGGTGGCCCCGGTTTTTTCTCGAATCAGCGAATACGTCATCGTCTCCATCGGAGTTTGGCTCATCTTCGGTAGAGGCTCACTGATGGACGCTCCGTTCGGCGGAGACACCAAGTGGTCATGGCTTCTGATATCGGCGGTGATCCTGGTTGGCATATTCTTGAATGCGCTCTTCGCGCGGATACACCGTCAAAGCATCTTGCTTCGCAACAAGCTCGTGGATCTGGCTTTTACCGATGCCCTGACTGGAATCGATAATCGCAGAAAATTTTTGAGTGATGTCGATAAAGCCCAAGGATCGCAAGACATGAATTCCGCCTGTCTCCTCATGATCGACATCGACAATTTCAAGCGCATCAATGACGAATTCGGCCACCCTTTGGGAGACGAAGTGCTTCAGCAGGTGGCTCAAACCATTCGCCAATCCGTTCCGGATGAGCCGTGCGGGCGACTCGGAGGCGAGGAGTTCGGGGTTTTTCTCACTCAGGGAGGAGAAGAGCGAGCGACCAAAATCGCAGATCAGCTATTGATCGAAATACGGGAACTGAACGTGATCGGTAGAAAAATCACCGCCAGCGTCGGAATTTCGAGAATGAATGAAAAACAATCATTTTCCGAGCTGATGAAAAATGCCGATGAGGCGTTGTATATCGCAAAAAGCCTCGGCAAAGATCGCTTTGCGATCTTTTAA
PROTEIN sequence
Length: 336
MKIEEVRVNEFRKLIKPLSLGMQLGGVFFVAMSWLLADDSYKYDIRQILLLLALTMISIGASWKIPFFSLFSITTVWLICLEFVLLAAPSANRDYWMTALSIGISLAVAPVFSRISEYVIVSIGVWLIFGRGSLMDAPFGGDTKWSWLLISAVILVGIFLNALFARIHRQSILLRNKLVDLAFTDALTGIDNRRKFLSDVDKAQGSQDMNSACLLMIDIDNFKRINDEFGHPLGDEVLQQVAQTIRQSVPDEPCGRLGGEEFGVFLTQGGEERATKIADQLLIEIRELNVIGRKITASVGISRMNEKQSFSELMKNADEALYIAKSLGKDRFAIF*