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SCNpilot_cont_300_bf_scaffold_53_curated

Search features with annotation key words

Displaying items 121-150 of 421 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_53_curated_121
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

115612..118176
DNA (2565bp) protein (855aa)
exonuclease n=1 Tax=Variovorax paradoxus RepID=UPI0003782B67
RecB family exonuclease {ECO:0000313|EMBL:EJL71193.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
exonuclease-like protein
SCNpilot_cont_300_bf_scaffold_53_curated_122
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

118173..121433
DNA (3261bp) protein (1087aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing n=1 Tax=Variovorax sp. CF313 RepID=J3CGH6_9BURK
uvrd/rep helicase
SCNpilot_cont_300_bf_scaffold_53_curated_123
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121430..122668
DNA (1239bp) protein (413aa)
HI0933 family protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0K3_VARPE
Variovorax paradoxus strain MEDvA23 contig_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34317.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein; K07007
SCNpilot_cont_300_bf_scaffold_53_curated_124
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

123036..124907
DNA (1872bp) protein (624aa)
DNA polymerase iii subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
DNA polymerase III, subunit gamma/tau n=1 Tax=Variovorax sp. CF313 RepID=J3CGZ7_9BURK
DNA polymerase III, subunit gamma/tau {ECO:0000313|EMBL:EJL71196.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_53_curated_125
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

124964..125296
DNA (333bp) protein (111aa)
Nucleoid-associated protein Varpa_2506 n=2 Tax=Variovorax RepID=E6V0K5_VARPE
hypothetical protein; K09747 hypothetical protein
Nucleoid-associated protein PMI12_04446 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_53_curated_126
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

125304..125894
DNA (591bp) protein (197aa)
Recombination protein RecR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0K6_VARPE
recombination protein recr; K06187 recombination protein RecR
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_53_curated_127
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

125922..126314
DNA (393bp) protein (131aa)
MAPEG family protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X9G7_VARPD
MAPEG family protein
MAPEG family protein {ECO:0000313|EMBL:AGU49572.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_53_curated_128
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

126452..127489
DNA (1038bp) protein (346aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000367CB9A
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:EJL71200.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_53_curated_129
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

127545..128360
DNA (816bp) protein (272aa)
ABC transporter, ATP-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XBA5_VARPD
ABC transporter, ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AGU49574.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_53_curated_130
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

128360..129202
DNA (843bp) protein (281aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Variovorax sp. CF313 RepID=J2SZU4_9BURK
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:EJL71202.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
SCNpilot_cont_300_bf_scaffold_53_curated_131
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

129278..130462
DNA (1185bp) protein (395aa)
Putative membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J2KDH0_9BURK
Putative membrane protein {ECO:0000313|EMBL:EJL71203.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ltrA; low temperature requirement A
SCNpilot_cont_300_bf_scaffold_53_curated_132
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(130480..132072)
DNA (1593bp) protein (531aa)
lytic transglycosylase; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-]
Soluble lytic murein transglycosylase-like protein n=1 Tax=Variovorax sp. CF313 RepID=J3CGI2_9BURK
Soluble lytic murein transglycosylase-like protein {ECO:0000313|EMBL:EJL71204.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_53_curated_133
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(132069..132803)
DNA (735bp) protein (245aa)
Hydroxyacylglutathione hydrolase {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352}; EC=3.1.2.6 {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352};; Glyoxalase II {ECO:0000256|HAMAP-Rule:MF_01374}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hydroxyacylglutathione hydrolase (EC:3.1.2.6); K01069 hydroxyacylglutathione hydrolase [EC:3.1.2.6]
Hydroxyacylglutathione hydrolase n=1 Tax=Variovorax sp. CF313 RepID=J2JTN4_9BURK
SCNpilot_cont_300_bf_scaffold_53_curated_134
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

132847..133617
DNA (771bp) protein (257aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Variovorax sp. CF313 RepID=J3CH03_9BURK
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:EJL71206.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative methyltransferase, type 11
SCNpilot_cont_300_bf_scaffold_53_curated_135
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

133620..134102
DNA (483bp) protein (161aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ribonuclease h (EC:3.1.26.4); K03469 ribonuclease HI [EC:3.1.26.4]
Ribonuclease H n=1 Tax=Variovorax sp. CF313 RepID=J2SZU9_9BURK
SCNpilot_cont_300_bf_scaffold_53_curated_136
Microcoleus vaginatus, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

134168..134623
DNA (456bp) protein (152aa)
Adenylate/guanylate cyclase with GAF and PAS/PAC sensors {ECO:0000313|EMBL:EGK85353.1}; EC=4.6.1.2 {ECO:0000313|EMBL:EGK85353.1};; TaxID=756067 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus vaginatus FGP-2.;"
adenylate/guanylate cyclase with GAF and PAS/PAC sensors (EC:4.6.1.2)
Adenylate/guanylate cyclase with GAF and PAS/PAC sensors n=1 Tax=Microcoleus vaginatus FGP-2 RepID=F5ULL0_9CYAN
SCNpilot_cont_300_bf_scaffold_53_curated_137
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(134646..135956)
DNA (1311bp) protein (437aa)
molybdenum cofactor synthesis domain-containing protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1]
Molybdenum cofactor synthesis domain containing protein n=1 Tax=Variovorax sp. CF313 RepID=J2KDH6_9BURK
Molybdenum cofactor synthesis domain containing protein {ECO:0000313|EMBL:EJL71208.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_53_curated_138
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(135961..136620)
DNA (660bp) protein (220aa)
Molybdenum cofactor guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907}; Short=MoCo guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316};; EC=2.7.7.77 {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907};; GTP:molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Mo-MPT guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin-guanine dinucleotide synthase {ECO:0000256
molybdopterin-guanine dinucleotide biosynthesis protein a; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77]
Molybdenum cofactor guanylyltransferase n=1 Tax=Variovorax sp. CF313 RepID=J3CGI6_9BURK
SCNpilot_cont_300_bf_scaffold_53_curated_139
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(136617..137774)
DNA (1158bp) protein (386aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Cyclic pyranopterin monophosphate synthase n=1 Tax=Variovorax sp. CF313 RepID=J2JTN8_9BURK
molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein
SCNpilot_cont_300_bf_scaffold_53_curated_140
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(137855..138556)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036C7B65
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU36721.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_53_curated_141
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

138752..139387
DNA (636bp) protein (212aa)
manganese/iron superoxide dismutase-like protein; K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
superoxide dismutase n=1 Tax=Variovorax paradoxus RepID=UPI00036154E4
SCNpilot_cont_300_bf_scaffold_53_curated_142
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

139397..140317
DNA (921bp) protein (307aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00036AADD1
zinc/iron permease; K07238 zinc transporter, ZIP family
Variovorax paradoxus strain MEDvA23 contig_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37561.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_53_curated_143
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(140433..141866)
DNA (1434bp) protein (478aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
aldehyde dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI00037C95A0
Aldehyde Dehydrogenase {ECO:0000313|EMBL:ADU36724.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_53_curated_144
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(141923..142480)
DNA (558bp) protein (186aa)
Peroxiredoxin n=1 Tax=Variovorax sp. CF313 RepID=J2SZV4_9BURK
Peroxiredoxin {ECO:0000313|EMBL:EJL71212.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
alkyl hydroperoxide reductase/thiol specific antioxidant/mal allergen
SCNpilot_cont_300_bf_scaffold_53_curated_145
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

142601..144175
DNA (1575bp) protein (525aa)
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase n=1 Tax=Variovorax sp. CF313 RepID=J2KDI1_9BURK
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase {ECO:0000313|EMBL:EJL71213.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phospholipase d/transphosphatidylase
SCNpilot_cont_300_bf_scaffold_53_curated_146
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

144224..144958
DNA (735bp) protein (245aa)
Sterol desaturase n=1 Tax=Variovorax sp. CF313 RepID=J3CGI9_9BURK
Sterol desaturase {ECO:0000313|EMBL:EJL71214.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
fatty acid hydroxylase
SCNpilot_cont_300_bf_scaffold_53_curated_147
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

144972..145880
DNA (909bp) protein (303aa)
Fatty acid desaturase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0M7_VARPE
Variovorax paradoxus strain MEDvA23 contig_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37528.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
fatty acid desaturase
SCNpilot_cont_300_bf_scaffold_53_curated_148
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

145884..147809
DNA (1926bp) protein (642aa)
3-oxoacyL-(acyL-carrier-protein (acp)) synthase iii domain-containing protein; K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
3-oxoacyl-(Acyl-carrier-protein) synthase III n=1 Tax=Variovorax sp. CF313 RepID=J3CH09_9BURK
3-oxoacyl-(Acyl-carrier-protein) synthase III {ECO:0000313|EMBL:EJL71216.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_53_curated_149
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

147787..148704
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0M9_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU36730.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_53_curated_150
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

148722..149093
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KDI6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL71218.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
Displaying items 121-150 of 421 in total

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