ggKbase home page

SCNpilot_cont_300_bf_scaffold_53_curated

Search features with annotation key words

Displaying items 91-120 of 421 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_53_curated_91
unknown

Not on your lists

comp(85349..85576)
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_53_curated_92
unknown

Not on your lists

86078..86413
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_53_curated_93
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86798..87532)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003680BEA
hypothetical protein
Tax=GWC2_Geobacteraceae_55_20_curated
SCNpilot_cont_300_bf_scaffold_53_curated_94
unknown

Not on your lists

comp(87628..87879)
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036B11CE
SCNpilot_cont_300_bf_scaffold_53_curated_95
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88063..88326
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X7C6_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU48832.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_53_curated_96
unknown

Not on your lists

88662..90344
DNA (1683bp) protein (561aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_53_curated_97
unknown

Not on your lists

90382..90597
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_53_curated_98
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92100..92312
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2X3Y1_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD34669.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
SCNpilot_cont_300_bf_scaffold_53_curated_99
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(93136..93978)
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00037A5784
Tax=RBG_16_Planctomycetes_55_9_curated
SCNpilot_cont_300_bf_scaffold_53_curated_100
Providencia rustigianii, Providencia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(94386..94604)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Providencia rustigianii DSM 4541 RepID=D1P054_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:EFB73470.1}; TaxID=500637 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Providencia.;" source="Providencia rustigianii DSM 4541.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_53_curated_101
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(94719..94982)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZH0_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU36683.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_53_curated_102
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95012..95482)
DNA (471bp) protein (157aa)
cyclic nucleotide-binding protein (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:ADU36684.1}; EC=1.8.1.9 {ECO:0000313|EMBL:ADU36684.1};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Cyclic nucleotide-binding protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZH1_VARPE
SCNpilot_cont_300_bf_scaffold_53_curated_103
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95434..96636)
DNA (1203bp) protein (401aa)
cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulfide oxidoreductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Thioredoxin reductase n=1 Tax=Variovorax sp. CF313 RepID=J3CGG6_9BURK
Thioredoxin reductase {ECO:0000313|EMBL:EJL71174.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_53_curated_104
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

96782..97666
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZH2_VARPE
Variovorax paradoxus strain MEDvA23 contig_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34301.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_53_curated_105
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

97846..99984
DNA (2139bp) protein (713aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
polyphosphate kinase (EC:2.7.4.1); K00937 polyphosphate kinase [EC:2.7.4.1]
polyphosphate kinase n=1 Tax=Variovorax paradoxus RepID=UPI00037900A7
SCNpilot_cont_300_bf_scaffold_53_curated_106
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

99998..100465
DNA (468bp) protein (156aa)
phosphohistidine phosphatase SixA; K08296 phosphohistidine phosphatase [EC:3.1.3.-]
phosphohistidine phosphatase n=1 Tax=Variovorax paradoxus RepID=UPI00036FD47C
Putative phosphohistidine phosphatase, SixA {ECO:0000313|EMBL:ADU36687.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_53_curated_107
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(100484..102004)
DNA (1521bp) protein (507aa)
ppx/gppa phosphatase (EC:3.6.1.40); K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Exopolyphosphatase n=1 Tax=Variovorax sp. CF313 RepID=J3CGG9_9BURK
Exopolyphosphatase {ECO:0000313|EMBL:EJL71179.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_53_curated_108
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

102255..103289
DNA (1035bp) protein (345aa)
Phosphate-binding protein PstS n=1 Tax=Variovorax sp. CF313 RepID=J2JTK7_9BURK
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phosphate ABC transporter periplasmic phosphate-binding protein; K02040 phosphate transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_53_curated_109
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

103320..104402
DNA (1083bp) protein (361aa)
phosphate transporter permease subunit PstC n=1 Tax=Variovorax paradoxus RepID=UPI00035E18A2
Phosphate ABC transporter, permease protein PstC {ECO:0000313|EMBL:EJL71181.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phosphate ABC transporter inner membrane subunit pstc; K02037 phosphate transport system permease protein
SCNpilot_cont_300_bf_scaffold_53_curated_110
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

104399..105286
DNA (888bp) protein (296aa)
phosphate transporter permease subunit PtsA n=1 Tax=Variovorax paradoxus RepID=UPI00037B6A49
Phosphate ABC transporter, permease protein PstA {ECO:0000313|EMBL:EJL71182.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
pstA; phosphate transporter permease subunit PtsA; K02038 phosphate transport system permease protein
SCNpilot_cont_300_bf_scaffold_53_curated_111
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

105304..106083
DNA (780bp) protein (260aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Phosphate ABC transporter, ATP-binding protein PstB n=1 Tax=Variovorax paradoxus B4 RepID=T1XB61_VARPD
pstB; phosphate ABC transporter, ATP-binding protein PstB
SCNpilot_cont_300_bf_scaffold_53_curated_112
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

106100..106801
DNA (702bp) protein (234aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Variovorax sp. CF313 RepID=J3CGH2_9BURK
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phosphate uptake regulator phou; K02039 phosphate transport system protein
SCNpilot_cont_300_bf_scaffold_53_curated_113
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

106830..107522
DNA (693bp) protein (231aa)
Two component transcriptional regulator PhoB, winged helix family n=2 Tax=Variovorax RepID=E6UZI1_VARPE
winged helix family two component transcriptional regulator PhoB; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB
Two component transcriptional regulator PhoB, winged helix family {ECO:0000313|EMBL:ADU36694.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_53_curated_114
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

107567..108910
DNA (1344bp) protein (448aa)
pas/pac sensor signal transduction histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZI2_VARPE
SCNpilot_cont_300_bf_scaffold_53_curated_115
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(108930..110282)
DNA (1353bp) protein (451aa)
MATE efflux family protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZI3_VARPE
Variovorax paradoxus strain MEDvA23 contig_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34310.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
mate efflux family protein; K03327 multidrug resistance protein, MATE family
SCNpilot_cont_300_bf_scaffold_53_curated_116
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(110279..111976)
DNA (1698bp) protein (566aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KDF7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL71188.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_53_curated_117
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(112094..112363)
DNA (270bp) protein (90aa)
50S ribosomal protein L31 n=1 Tax=Variovorax paradoxus RepID=UPI000373867A
50S ribosomal protein L31; K02909 large subunit ribosomal protein L31
50S ribosomal protein L31 {ECO:0000256|RuleBase:RU000564}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_53_curated_118
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

112545..113612
DNA (1068bp) protein (356aa)
Putative dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2JTL6_9BURK
Variovorax paradoxus strain MEDvA23 contig_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34313.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
oxidoreductase domain-containing protein
SCNpilot_cont_300_bf_scaffold_53_curated_119
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113671..114936)
DNA (1266bp) protein (422aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Transcription termination factor Rho n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZI7_VARPE
transcription termination factor rho; K03628 transcription termination factor Rho
SCNpilot_cont_300_bf_scaffold_53_curated_120
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(115121..115453)
DNA (333bp) protein (111aa)
Thioredoxin n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZI8_VARPE
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
thioredoxin; K03671 thioredoxin 1
Displaying items 91-120 of 421 in total

View Taxonomy