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SCNpilot_cont_300_bf_scaffold_53_curated_119

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(113671..114936)

Top 3 Functional Annotations

Value Algorithm Source
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.8
  • Coverage: 421.0
  • Bit_score: 821
  • Evalue 5.90e-235
Transcription termination factor Rho n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZI7_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 99.8
  • Coverage: 421.0
  • Bit_score: 821
  • Evalue 4.20e-235
transcription termination factor rho; K03628 transcription termination factor Rho similarity KEGG
DB: KEGG
  • Identity: 99.8
  • Coverage: 421.0
  • Bit_score: 821
  • Evalue 1.30e-235

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1266
ATGCACTTAAACGAACTCAAGGCACTCCACGTGTCTGAAGTCCTCAAGCAGGCTGAAGCGCTTGAGATCGAAAACGTCGGCCGCATGCGCAAGCAGGAGCTGATGTTCGCGATCATCAAGAAGCGCGCCAAGGCCGGCGAGCAGGTCTTCGCCGACGGCGTGCTCGAAATCCTGCCGGACGGCTTCGGCTTCCTGCGCAGCCCCGACACCAGCTTCACGGCCAGCACGGACGACATCTACATCTCGCCCAGCCAGGTGCGCCGCTTCAACCTGCACACCGGCGACATGATCGAAGGCGAAGTGCGCACGCCCAAGGACGGCGAACGCTACTTCGCGCTGACCAAGCTCGACAAGGTCAACGACGGTCCGCCAGAGCAGAACAAGCACAAGGTGATGTTCGAGAACCTGACGCCGCTGTTCCCCAAGGAGCAGATGAAGCTCGAACGCGACGGCATCAAGGGCGAAGAGAACATCACGGGCCGCATCATCGACATCATCGCCCCCATCGGCAAAGGCCAGCGCGCCCTGCTCGTGGCACCGCCCAAGAGCGGCAAGACGGTGATGATGCAGCACATCGCCCACGCGATCAGCGCCAACTACCCCGACGTCCACATGATGGTGCTGCTCGTCGACGAGCGCCCCGAAGAAGTGACCGAAATGCAGCGCACGGTGAAGGGCGAGGTCATTGCCTCGACTTTCGACGAGCCCGCAGCGCGCCACGTGCACGTCGCCGAAATGGTGATCGAGCGCGCCAAGCGCCTGGTCGAACTCAAGAAGGACGTGGTGATCCTGCTCGACTCGATCACCCGCCTCGCCCGCGCCTACAACAACGTCGTGCCCTCGTCGGGCAAGGTGCTGACCGGCGGTGTCGATTCCAACGCCCTGCAGCGCCCCAAGCGCTTCCTGGGCGCCGCGCGCAACGTGGAAGAAGGCGGCTCGCTGACCATCATCGGCACCGCGCTGATCGACACCGGCAGCCGCATGGACGAAGTGATCTTCGAAGAGTTCAAGGGCACCGGCAACTCCGAAATCCACCTCGACCGCCGCCTGTACGAAAAGCGCGTGTTCCCCTCGATCCAGCTCAACCGCAGCGGCACCCGCCGCGAAGAGCTGCTGCTGGCACCCGAGATCTTGCAGAAGACCCGCATCCTGCGCCAGCTCATGTACAACATGGACGAGATCGAGTCGATGGAGCTGATGCTCAAGAACATGAAGGCGACCAAGACCAATGTCGAGTTCTTCGACATGATGCGTCGCGGCGGCTGA
PROTEIN sequence
Length: 422
MHLNELKALHVSEVLKQAEALEIENVGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPDGFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVNDGPPEQNKHKVMFENLTPLFPKEQMKLERDGIKGEENITGRIIDIIAPIGKGQRALLVAPPKSGKTVMMQHIAHAISANYPDVHMMVLLVDERPEEVTEMQRTVKGEVIASTFDEPAARHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDSNALQRPKRFLGAARNVEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGNSEIHLDRRLYEKRVFPSIQLNRSGTRREELLLAPEILQKTRILRQLMYNMDEIESMELMLKNMKATKTNVEFFDMMRRGG*