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SCNpilot_cont_300_bf_scaffold_53_curated_37

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(35862..36467)

Top 3 Functional Annotations

Value Algorithm Source
transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036436EA similarity UNIREF
DB: UNIREF100
  • Identity: 83.6
  • Coverage: 201.0
  • Bit_score: 327
  • Evalue 9.20e-87
transcriptional regulator, XRE family similarity KEGG
DB: KEGG
  • Identity: 83.6
  • Coverage: 201.0
  • Bit_score: 327
  • Evalue 2.90e-87
Variovorax paradoxus strain MEDvA23 contig_52, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27876.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.8
  • Coverage: 188.0
  • Bit_score: 327
  • Evalue 9.80e-87

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 606
ATGGGAAACACTTCATCCGCTTCCGTCGTTTCTTCTTCGGGAGACGCCGCCGACGGCATCGACGCCCTCATCGCCTCCCGGCTGCTGGCGCTTCGGCAGGCGCGGGAACTCAGCCTTGCCGAGCTGGCCGAGCTCTCGGGAGTCAGCAAGGCCATGATCTCGAAGGTGGAGCGCGCGCAAAGCAGCCCGACGGCCGTGCTGCTGGGCCGGCTGGCGGCCGGGCTCGGCGTGCCGCTGGCGCAACTGCTGACCGAGGACGGCGACCGCCCCCAGCGCCTGCGCACGCGGGCCGAGCAGCATGTGTGGCGCGATCCCGAGGCAGGCTACCTGCGGCGCCAGGTGGCCGAGCGGCAGGCGGGCAGCGGCGTCGAGCTGGTCGAGGTCGAGCTGCCGCGTTCGGCGCAGGTGAGCTATCCGCGCTGGAGCGGCAAGCCGTACCGCCAGTGCCTGTGGATGCTCGAAGGCGCCTTGCGCGTGGACTACGGCGACGAACGCTTCGAACTGGCCCCCGGCGACTGCCTCGACTTCGGCGTGGACCGGCCGCTGGTGTTCAAGGCGCTGGGGCGCAGCGGCTGCCGCTACCTGCTGGTGGCGAGCCCGTCCTAG
PROTEIN sequence
Length: 202
MGNTSSASVVSSSGDAADGIDALIASRLLALRQARELSLAELAELSGVSKAMISKVERAQSSPTAVLLGRLAAGLGVPLAQLLTEDGDRPQRLRTRAEQHVWRDPEAGYLRRQVAERQAGSGVELVEVELPRSAQVSYPRWSGKPYRQCLWMLEGALRVDYGDERFELAPGDCLDFGVDRPLVFKALGRSGCRYLLVASPS*