ggKbase home page

SCNpilot_cont_300_bf_scaffold_59_curated_18

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(18857..19789)

Top 3 Functional Annotations

Value Algorithm Source
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Variovorax sp. CF313 RepID=J3CRD6_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 98.4
  • Coverage: 310.0
  • Bit_score: 623
  • Evalue 1.60e-175
tRNA 2-thiocytidine biosynthesis protein TtcA {ECO:0000256|HAMAP-Rule:MF_01850}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.4
  • Coverage: 310.0
  • Bit_score: 623
  • Evalue 2.30e-175
ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA similarity KEGG
DB: KEGG
  • Identity: 94.5
  • Coverage: 310.0
  • Bit_score: 601
  • Evalue 2.10e-169

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 933
ATGAACGCCGTCTGGATCGACGAGGCGCCCGCCGCCGCCGACGCCACTGCCAATTCCCTCAAGATCGAACGCGAGACGCACAAGCTCGAAAAGCGCCTGTGCCGCCAGGTCGGGCAGGCCATCGTCGACTACAACATGATCGAAGAGGGCGACAAGGTCATGGTGTGCGTCTCGGGCGGAAAAGACAGCTACGCGCTGCTCGACATCCTGCTCAAGCTCAAGGCCCGCGCGCCCATCCACTTCGACATCGTCGCGGTCAACCTCGACCAGAAGCAGCCCGGCTTTCCCGAAGAAGTGCTGCCCAAGTACCTGAGCGATCTGGGCGTGGACTTCCACATCGAGAACCAGGACACCTACAGCATCGTCAAGCGCGTCATTCCCGAGGGCAAGACCACCTGCGGCCTGTGCAGCCGGCTGCGCCGCGGCATCCTGTACCGCGTGGCCGACGAGCTGGGCGCCACCAAGGTCGCGCTGGGCCACCACCGCGACGACATGCTGCAGACCTTCTTCCTCAACATGTTCTTCGCCGGCAAGCTCAAGAGCATGCCGCCCAAGCTGGTGAGCGACGACGGCAAGCACATCGTGATCCGCCCGCTGGCCTACGTGGCCGAGAAAGACACCGTGCGCTGGGCCCAGCACCGCGAGTTCCCGATCATTCCGTGCACCCTGTGCGGCAGCCAGGAGAACCTGCAGCGCAAGCAGGTCGGAGAGATGCTGCGCGAGTGGGACAAGAAGTACCCCGGCCGCGTCGAGAACATGTTCACCGCGCTGCAGAACGTGGTGCCTTCGCACCTGCTCGACGGAACGCGGCACGATTTCAAGGGTCTCAAGGCGACCGGCGTGGCGGATGACGACGGCGACAAGGCCTTCGACACGCCTTCTTTCGACTTGCTCTCCCAGGCACCCTCAGCACTGCGCATCGTCCAGGGCTGA
PROTEIN sequence
Length: 311
MNAVWIDEAPAAADATANSLKIERETHKLEKRLCRQVGQAIVDYNMIEEGDKVMVCVSGGKDSYALLDILLKLKARAPIHFDIVAVNLDQKQPGFPEEVLPKYLSDLGVDFHIENQDTYSIVKRVIPEGKTTCGLCSRLRRGILYRVADELGATKVALGHHRDDMLQTFFLNMFFAGKLKSMPPKLVSDDGKHIVIRPLAYVAEKDTVRWAQHREFPIIPCTLCGSQENLQRKQVGEMLREWDKKYPGRVENMFTALQNVVPSHLLDGTRHDFKGLKATGVADDDGDKAFDTPSFDLLSQAPSALRIVQG*