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SCNpilot_cont_300_bf_scaffold_59_curated

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Displaying items 1-30 of 244 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_59_curated_1
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1082)
DNA (1080bp) protein (360aa)
Putative uncharacterized protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TJY6_ACIAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM31274.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_cont_300_bf_scaffold_59_curated_2
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1079..2278)
DNA (1200bp) protein (400aa)
Integrase-tyrosine recombinase protein n=4 Tax=Proteobacteria RepID=Q8XW53_RALSO
integrase rbh
Integrase protein {ECO:0000313|EMBL:EKX83051.1}; TaxID=1005395 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida CSV86.;"
SCNpilot_cont_300_bf_scaffold_59_curated_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2511..4517)
DNA (2007bp) protein (669aa)
family 2 glycosyl transferase; K03669 membrane glycosyltransferase [EC:2.4.1.-]
glucosyl transferase family 2 n=1 Tax=Variovorax paradoxus RepID=UPI00035D9B45
Membrane glycosyltransferase {ECO:0000313|EMBL:EJL76968.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_59_curated_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4523..4726)
DNA (204bp) protein (68aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CNJ9_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS17615.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_59_curated_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4920..6308)
DNA (1389bp) protein (463aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Variovorax sp. CF313 RepID=J3CRC8_9BURK
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:EJL76969.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
two component sigma-54 specific Fis family transcriptional regulator; K07715 two-component system, NtrC family, response regulator GlrR
SCNpilot_cont_300_bf_scaffold_59_curated_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6305..6916)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2K9P1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL76970.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_59_curated_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7015..8442)
DNA (1428bp) protein (476aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
integral membrane sensor signal transduction histidine kinase; K07711 two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
Signal transduction histidine kinase n=1 Tax=Variovorax sp. CF313 RepID=J3CRW2_9BURK
SCNpilot_cont_300_bf_scaffold_59_curated_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8442..9788)
DNA (1347bp) protein (449aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
(dimethylallyl)adenosine tRNA methylthiotransferase n=1 Tax=Variovorax paradoxus RepID=UPI00036E5839
tRNA-i(6)a37 thiotransferase protein MiaB; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
SCNpilot_cont_300_bf_scaffold_59_curated_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9874..10332)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KVC4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL76973.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_59_curated_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10586..11773
DNA (1188bp) protein (396aa)
RND transporter n=1 Tax=Variovorax paradoxus RepID=UPI000362C184
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:EJL76974.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
RND family efflux transporter mfp subunit
SCNpilot_cont_300_bf_scaffold_59_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11770..14922
DNA (3153bp) protein (1051aa)
multidrug transporter n=1 Tax=Variovorax paradoxus RepID=UPI000361BFF6
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
Acriflavin resistance protein {ECO:0000313|EMBL:ADU35245.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_59_curated_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14939..15214)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVL3_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU35246.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_59_curated_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15211..15918)
DNA (708bp) protein (236aa)
AzlC family protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVL4_VARPE
azlc family protein
AzlC family protein {ECO:0000313|EMBL:ADU35247.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_59_curated_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15927..16673)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVL5_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU35248.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_59_curated_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16747..17457)
DNA (711bp) protein (237aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVL6_VARPE
Crp/Fnr family transcriptional regulator
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ADU35249.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_59_curated_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17524..18168)
DNA (645bp) protein (215aa)
phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Fructose-2,6-bisphosphatase n=1 Tax=Variovorax sp. CF313 RepID=J2TF33_9BURK
Fructose-2,6-bisphosphatase {ECO:0000313|EMBL:EJL76977.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_59_curated_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18189..18809)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000364D115
Uncharacterized protein {ECO:0000313|EMBL:EJL76978.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_59_curated_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18857..19789)
DNA (933bp) protein (311aa)
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Variovorax sp. CF313 RepID=J3CRD6_9BURK
tRNA 2-thiocytidine biosynthesis protein TtcA {ECO:0000256|HAMAP-Rule:MF_01850}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
SCNpilot_cont_300_bf_scaffold_59_curated_19
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19852..20802)
DNA (951bp) protein (317aa)
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003823CF5
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG24602.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
transcriptional regulator, LysR family
SCNpilot_cont_300_bf_scaffold_59_curated_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20902..22125
DNA (1224bp) protein (408aa)
MFS transporter n=1 Tax=Variovorax paradoxus RepID=UPI00036C70A7
putative transporter, MFS-type
Putative transporter, MFS-type {ECO:0000313|EMBL:AGU51973.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_59_curated_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22141..22539)
DNA (399bp) protein (133aa)
dihydroneopterin aldolase; K01633 dihydroneopterin aldolase [EC:4.1.2.25]
Dihydroneopterin aldolase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVM1_VARPE
Dihydroneopterin aldolase {ECO:0000313|EMBL:ADU35254.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_59_curated_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22551..23327)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CRW8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL76981.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
short-chain dehydrogenase/reductase sdr
SCNpilot_cont_300_bf_scaffold_59_curated_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23351..24463
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2TF37_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL76982.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_59_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25126..26022
DNA (897bp) protein (299aa)
taurine dioxygenase (EC:1.14.11.17); K03119 taurine dioxygenase [EC:1.14.11.17]
taurine dioxygenase n=1 Tax=Variovorax paradoxus RepID=UPI0003679651
Variovorax paradoxus strain MEDvA23 contig_135, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16266.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_59_curated_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26048..27058
DNA (1011bp) protein (337aa)
nitrate ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00036B0430
nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein; K02051 NitT/TauT family transport system substrate-binding protein
Nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein {ECO:0000313|EMBL:ADU35258.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_59_curated_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27058..27981
DNA (924bp) protein (308aa)
sulfonate ABC transporter ATP-binding lipoprotein n=1 Tax=Variovorax paradoxus RepID=UPI0003795C9D
Variovorax paradoxus strain MEDvA23 contig_135, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16268.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_59_curated_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28103..28972
DNA (870bp) protein (290aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00036BCC24
Variovorax paradoxus strain MEDvA23 contig_135, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16269.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
SCNpilot_cont_300_bf_scaffold_59_curated_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29073..29849
DNA (777bp) protein (259aa)
Histidinol-phosphate phosphatase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVM9_VARPE
Variovorax paradoxus strain MEDvA23 contig_135, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16271.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
histidinoL-phosphate phosphatase
SCNpilot_cont_300_bf_scaffold_59_curated_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29860..30054
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CRX1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL76986.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_59_curated_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30089..31015
DNA (927bp) protein (309aa)
rok family protein; K00845 glucokinase [EC:2.7.1.2]
ROK family protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVN1_VARPE
ROK family protein {ECO:0000313|EMBL:ADU35264.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Displaying items 1-30 of 244 in total

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