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SCNpilot_cont_300_bf_scaffold_112_curated_1

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(2..2455)

Top 3 Functional Annotations

Value Algorithm Source
transporter n=1 Tax=Variovorax paradoxus RepID=UPI0003818C65 similarity UNIREF
DB: UNIREF100
  • Identity: 49.6
  • Coverage: 730.0
  • Bit_score: 575
  • Evalue 7.80e-161
outer membrane autotransporter barrel domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 44.1
  • Coverage: 874.0
  • Bit_score: 559
  • Evalue 2.40e-156
Outer membrane autotransporter barrel domain protein {ECO:0000313|EMBL:ACS19464.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.1
  • Coverage: 874.0
  • Bit_score: 559
  • Evalue 1.10e-155

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2454
ATGAACAAGACTTATCGAAATCTTTGGAATCCTGCGCTGGGCGCGTGGGTGGCCGTGTCCGAGCACACGCGCTCGCGGGGCAAGCGCGCCGGCACCGTCGTGCTGGCAGCCGCGCTCGCCATGCCGTTCGCCGCTCTGGCGAACGGCGGTGACGGCGGCGGCGGGATGGCGGCCGGCGGCGGCGTCGGTGCAGCGTCCGGCAACGCCGGTGGCAACGCGCCCGTGAACGGTTTTGGCGGTGGCGGAGGAGGCGCTGGAGGCGCGGGCGGGGCAGGTGCCCGTGTGGGGGGAGGAGGCAGCCTGGGTGGCCTGGCTGGCAGCGCGCCCGGCGCAGACGGTTTCGACGGTGCGGCTGCATTGGAAGAGTTCAGCGGCGGTGGCGGTGGTGGCGGCGGCAGCCACGGCTACGCCGGCAGCACGCTCTCGAGCGGCAATCTGACGGGTGGACGCGGAGGGGCCGGAGGTGCGGCCTATGCCGGACCGATCAGCGGCGGCGGAGGCGGGGGCGGCGAAGGCGGGTTCGGCGCCGCGATCACGAACGGAGGCGACACGGCCGTCGCGGCCGGTCAGCTCATCACGGGAGGCGGGGGCGGCAACGGTGGTGCGACCTCCTCGGAGATCGGCCCCAACTTTGCAAGTGGCGCAGGCGGTGACGGCGGCGCCGGCATGTCCTACAGCGGCCACCTGCTGGACAACGCAGGCACCCTGAAAGGCGGCGACGGTGGAAACGGCGGCAACGCGAGCGGGGCCGGGCCGTTCGCTCCTTTGCCTCCTGCCATCGGCGGAGCGGGGGGCGCGGGTCTTCGGCAATCGGACGGCACGCTGCTCAACAGCGGCAACATCATCGGCGGCAACGGTGGCGCGAGCGGCCTCTTTGTGACGACGCCCATCGGCGGAACACCGGCGCTGCCGGCGCCGGCCGAGGGCGGGGTCGGCGTCGTGGGCAGCAACCTCAACATCGTCAACATCGGCGTGATTTCCGGTGGCTACGCGAGCGGGCATCAAGGCGACCCCAACTACCGCGCCGCGGCCATCGTTTTCACTGGCGGCACCAATCGGCTGGAGTTGAGGCGCGATGCGTCCTTCGGCGGCGTGGTCGATGCCAGTCGCGGCACGAACACCCTGGCACTCGGCGGCACGGACGATCGGCGCTTCGATGTCTCGCTGATCGGCAACGCGGGCCAGTTCCGGGGGTTCGCGAGCTTCGAGAAGACCGGCACCGCCAACTGGATCCTCGACAACACCACCACGGCCGTGACGCCATGGACGCTGCGCCAGGGCACGCTGACGATCTCGAGCGATGCCAGCCTCGGCGACGTATCGGGAAAACTGACGCTGGACGGCGGCACCCTGCAGACCTCGCAATCGATCGCCACCAGCCGGGCCATCGCGATAGGTGCCAATGGGGGCGCTGTCGAGGTCGACCTGGCCCGTGTCCTCACCCTGAACGGCACGATCTCGGGCGGGAGCACGGGCACGCTGGTCAAGTCCGGTCAGGGCCGGATGGAACTGAATGCCGCCAGCACCTACGGTGGCGGCACGTCGGTGGTCGGCGGCGAATTGCACGTCGGCATCACCGGTGCGCTGGGCACCGGCCCGGTGTCGGTCGGAGCGGGGACCGCGCTGGTCTTCAACGGCGCTTCGGACGCGGCGGCACTCAAGATCACCGCGGGTCCGAGCGATCCGGGCTTGTTCAATGCGGGCAGCGTTCAGTTCAACGACAACACGTCGGCGGGCAGTGCGCAGATCACCCTGAACGGTGGCACGGTCGGTTTCAAGGACAACGCCACGGCGGGACAGGCGCTGATCGACAACTACGGCGGCTCTGTCAGCTTTGCCGGACAGGCCACGATCGGGCAGGCCACCATCGTGAACCATGCGGGAGGAGAAACCACGCTGTTCGGCGACATCGACGCCGGCCGAGCCAAGTTCGTCAACCAGAGCGGCGGCGTGCTGGACATCTGGGATCAACCCGTCCTCGGGCAGGCCACTTTTGTGAATCAGAAAGGCGGCCTTGTCGTTCTCAGGAACGTCACCGCCAACAGCGTCAGCATCGGCTCGCTGGAGGGCGGCGGTAACGTCCTGATCGGTGCCAAGTCGCTGGTGGTCGGAGGGCTCGGCACGAGCACCGAGGTCTCGGGCGTCATCTCCGGCACCGGCGGCTCGCTGGTGAAAGTGGGCACGGGCGCGCTGACGCTGTCGGGCGCCAACACCTACACGGGCGGCACGATGCTGCGCCAGGGGCGCCTGAACGTCGGCAGCAGCCAGGCCCTGGGCACCGGCACGCTGTCGATGGACGACGACACGACGCTGGGCTTCAGCGCCGACGGCCTGACCATCGCCAACACCATCCATCTGACCGGCCAGCTCGATCCGATCATCGACACCGGCGCGTTCTCGGGCACGCTGAGCGGCGCCATCTCCGGCGGCGGCTTCATCACCAAGGAAGGCACG
PROTEIN sequence
Length: 818
MNKTYRNLWNPALGAWVAVSEHTRSRGKRAGTVVLAAALAMPFAALANGGDGGGGMAAGGGVGAASGNAGGNAPVNGFGGGGGGAGGAGGAGARVGGGGSLGGLAGSAPGADGFDGAAALEEFSGGGGGGGGSHGYAGSTLSSGNLTGGRGGAGGAAYAGPISGGGGGGGEGGFGAAITNGGDTAVAAGQLITGGGGGNGGATSSEIGPNFASGAGGDGGAGMSYSGHLLDNAGTLKGGDGGNGGNASGAGPFAPLPPAIGGAGGAGLRQSDGTLLNSGNIIGGNGGASGLFVTTPIGGTPALPAPAEGGVGVVGSNLNIVNIGVISGGYASGHQGDPNYRAAAIVFTGGTNRLELRRDASFGGVVDASRGTNTLALGGTDDRRFDVSLIGNAGQFRGFASFEKTGTANWILDNTTTAVTPWTLRQGTLTISSDASLGDVSGKLTLDGGTLQTSQSIATSRAIAIGANGGAVEVDLARVLTLNGTISGGSTGTLVKSGQGRMELNAASTYGGGTSVVGGELHVGITGALGTGPVSVGAGTALVFNGASDAAALKITAGPSDPGLFNAGSVQFNDNTSAGSAQITLNGGTVGFKDNATAGQALIDNYGGSVSFAGQATIGQATIVNHAGGETTLFGDIDAGRAKFVNQSGGVLDIWDQPVLGQATFVNQKGGLVVLRNVTANSVSIGSLEGGGNVLIGAKSLVVGGLGTSTEVSGVISGTGGSLVKVGTGALTLSGANTYTGGTMLRQGRLNVGSSQALGTGTLSMDDDTTLGFSADGLTIANTIHLTGQLDPIIDTGAFSGTLSGAISGGGFITKEGT