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SCNpilot_cont_300_bf_scaffold_112_curated

Search features with annotation key words

Displaying items 1-30 of 163 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_112_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..2455)
DNA (2454bp) protein (818aa)
transporter n=1 Tax=Variovorax paradoxus RepID=UPI0003818C65
outer membrane autotransporter barrel domain-containing protein
Outer membrane autotransporter barrel domain protein {ECO:0000313|EMBL:ACS19464.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_112_curated_2
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2610..3332
DNA (723bp) protein (241aa)
Putative transcriptional regulator n=1 Tax=Acidovorax sp. CF316 RepID=J1ERJ8_9BURK
Putative transcriptional regulator {ECO:0000313|EMBL:EJE54769.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_112_curated_3
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3367..3738
DNA (372bp) protein (124aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LJ24_BURGS
Glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:AEA63714.1}; TaxID=999541 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (strain BSR3).;"
SCNpilot_cont_300_bf_scaffold_112_curated_4
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3731..4867)
DNA (1137bp) protein (379aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI00031F3891
Branched-chain amino acid ABC transporter periplasmic protein {ECO:0000313|EMBL:EOA06593.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
branched-chain amino acid ABC transporter periplasmic protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_112_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4884..5957)
DNA (1074bp) protein (358aa)
Rieske (2Fe-2S) domain protein; K03862 vanillate monooxygenase [EC:1.14.13.82]
Rieske (2Fe-2S) domain protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D1V2_VARPS
Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:ACS22872.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_112_curated_6
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6070..7113
DNA (1044bp) protein (348aa)
LysR-family transcriptional regulator n=1 Tax=Ralstonia solanacearum FQY_4 RepID=M4UE73_RALSL
LysR-family transcriptional regulator
LysR-family transcriptional regulator {ECO:0000313|EMBL:AGH84718.1}; TaxID=1262456 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum FQY_4.;"
SCNpilot_cont_300_bf_scaffold_112_curated_7
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7110..7481)
DNA (372bp) protein (124aa)
ketosteroid isomerase n=1 Tax=Variovorax paradoxus RepID=UPI00037BE42A
Ketosteroid isomerase-like protein {ECO:0000313|EMBL:EJL89720.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_112_curated_8
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7634..8611)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KCA1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJE48748.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_112_curated_9
Leptospira kmetyi, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

8792..10495
DNA (1704bp) protein (568aa)
3-carboxymuconate cyclase n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IQ15_9BURK
PF14289 domain protein {ECO:0000313|EMBL:EQA53554.1}; TaxID=1049970 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira kmetyi serovar Malaysia str. Bejo-Iso9.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_112_curated_10
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10577..11143)
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003636EBF
Uncharacterized protein {ECO:0000313|EMBL:EPX98785.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_112_curated_11
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11354..11905
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037FE2BC
Uncharacterized protein {ECO:0000313|EMBL:EPX98786.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
TetR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_112_curated_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11965..13377)
DNA (1413bp) protein (471aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037BE334
Variovorax paradoxus strain MEDvA23 contig_5, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ36871.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
RSp0820; hemagglutinin-related protein
SCNpilot_cont_300_bf_scaffold_112_curated_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13480..14385)
DNA (906bp) protein (302aa)
procollagen-proline dioxygenase (EC:1.14.11.2); K00472 prolyl 4-hydroxylase [EC:1.14.11.2]
Procollagen-proline dioxygenase {ECO:0000313|EMBL:ADU38711.1}; EC=1.14.11.2 {ECO:0000313|EMBL:ADU38711.1};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Procollagen-proline dioxygenase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVB7_VARPE
SCNpilot_cont_300_bf_scaffold_112_curated_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14390..15061)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVB8_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU38712.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_112_curated_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15103..15747)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVB9_VARPE
Variovorax paradoxus strain MEDvA23 contig_65, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25705.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_112_curated_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15766..17145)
DNA (1380bp) protein (460aa)
di-heme cytochrome c peroxidase; K00428 cytochrome c peroxidase [EC:1.11.1.5]
Di-heme cytochrome c peroxidase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVC0_VARPE
Variovorax paradoxus strain MEDvA23 contig_65, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25748.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_112_curated_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17276..19726)
DNA (2451bp) protein (817aa)
Phosphoesterase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVC1_VARPE
Variovorax paradoxus strain MEDvA23 contig_65, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25706.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
phosphoesterase
SCNpilot_cont_300_bf_scaffold_112_curated_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20528..21574
DNA (1047bp) protein (349aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003813D1B
TRAP dicarboxylate transporter subunit DctP
TRAP dicarboxylate transporter-DctP subunit {ECO:0000313|EMBL:ACS17368.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_112_curated_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21571..24597
DNA (3027bp) protein (1009aa)
diguanylate cyclase n=1 Tax=Variovorax paradoxus RepID=UPI00037180B1
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:ACS17369.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_cont_300_bf_scaffold_112_curated_20
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24597..26318
DNA (1722bp) protein (574aa)
peptide transporter n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034CDAD4
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG23610.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
Oligopeptide transporter, OPT superfamily
SCNpilot_cont_300_bf_scaffold_112_curated_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26507..27481
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003618C3F
Variovorax paradoxus strain MEDvA23 contig_135, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16315.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_112_curated_22
Streptomonospora alba, Streptomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27592..28728)
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003748CC7
Monooxygenase {ECO:0000313|EMBL:KIH99689.1}; TaxID=183763 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Streptomonospora.;" source="Streptomonospora alba.;"
monooxygenase FAD-binding protein
SCNpilot_cont_300_bf_scaffold_112_curated_23
bacterium YEK0313, Bacteria

Not on your lists

comp(28748..29845)
DNA (1098bp) protein (366aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000376D175
NMT1/THI5 like protein {ECO:0000313|EMBL:CEJ15021.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative ABC-type nitrate/sulfonate/bicarbonate transport system periplasmic component
SCNpilot_cont_300_bf_scaffold_112_curated_24
bacterium YEK0313, Bacteria

Not on your lists

comp(29888..30790)
DNA (903bp) protein (301aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00037197E6
Putative aliphatic sulfonates transport permease protein SsuC {ECO:0000313|EMBL:CEJ15023.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein
SCNpilot_cont_300_bf_scaffold_112_curated_25
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30805..31623)
DNA (819bp) protein (273aa)
ABC transporter n=1 Tax=Variovorax paradoxus RepID=UPI00036002CA
ABC transporter related {ECO:0000313|EMBL:EDT09980.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_112_curated_26
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31620..32411)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037024A9
Uncharacterized protein {ECO:0000313|EMBL:ERF81842.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
Alpha/beta hydrolase fold protein
SCNpilot_cont_300_bf_scaffold_112_curated_27
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32408..32824)
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003651E8F
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABM59108.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_cont_300_bf_scaffold_112_curated_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32815..33369)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000369B24B
Variovorax paradoxus strain MEDvA23 contig_65, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25746.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_112_curated_29
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33446..34417
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000361F6F5
LysR family transcriptional regulator
Putative transcriptional regulator, LysR family {ECO:0000313|EMBL:ABF10901.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
SCNpilot_cont_300_bf_scaffold_112_curated_30
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34454..35764)
DNA (1311bp) protein (437aa)
Bacterial regulatory protein, GntR family protein 66 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HHC5_ACHXA
GntR family transcriptional regulator
Bacterial regulatory protein, GntR family protein 66 {ECO:0000313|EMBL:ADP19075.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
Displaying items 1-30 of 163 in total

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