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SCNpilot_cont_300_bf_scaffold_329_curated_31

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(38430..39968)

Top 3 Functional Annotations

Value Algorithm Source
secretion protein HlyD n=1 Tax=Variovorax paradoxus RepID=UPI000375FFF3 similarity UNIREF
DB: UNIREF100
  • Identity: 80.1
  • Coverage: 517.0
  • Bit_score: 769
  • Evalue 1.80e-219
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:EJL74561.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.1
  • Coverage: 513.0
  • Bit_score: 764
  • Evalue 1.40e-217
RND family efflux transporter mfp subunit; K07799 putative multidrug efflux transporter MdtA similarity KEGG
DB: KEGG
  • Identity: 74.8
  • Coverage: 511.0
  • Bit_score: 724
  • Evalue 2.10e-206

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1539
ATGGAACAAGAAAAACCGACCGAGCCCCTGCCCGCCAACGTGTCTCCCACACATCCACCGGTGCGCAGGCGTCGCTGGGTAGGGGCATTGCTGACGCTGCTGCTGCTTGCAATCCTGGGAGGCGGTGCGTGGTATCTGATCCAGCGTGCGAAGACGCCGGCGGGTGCGCCTGGCGCGGCCCCGGGCGGCCGGCCGGGCGGCCCCGGCGGCGCGGGTGGTCCGGGCGCGCGCGGCGGTGGCGGCCCTGGTGGCCCCGGCGGCGCGGCCACCAGCACCGTGGGCATCGCGACGGCCAAGAAGGCCGACATTCCGGTGCAGCTGGAGGCGCTGGGCACGGTCACGCCGCTGGCCAACGTGGTGGTGCAGCCGCAGGTGTCGGGCGTGCTCACCGCGGTGCTCTTCCAGGAAGGGCAGATGGTCAAGAAGGGCGACGTGCTGGCCACCATCGACCCGCAGCCGTTCCAGAACGCACTGGCACAGGCCACCGGCGCACGCCAGCGCGACGAGGCCCAGTTGGCCGCCGCGCGCGTCACACTGTCGCGCTACCAGACACTGCTGGGCCAGGACTCCATCGCCCGGCAAGACGTCGACACCCAGGCCGCGCTGGTCAAGCAGCTCGAAGGCACCGTGGCCATCGACCGCGCCAACGAGAACACCGCCAAGCTCAATCTCACCTGGAGCCGCATCACCGCGCCGGTGAGCGGGCGCATCGGCCTGCGGCCGGTGGACGCGGGCAACTACATTTCCACCGGCGCCACCAACGGCATCGCGACCATCACCCAGATCACGCCGATCGACGTTGAGTTCGCCATTCCGCAAGACCGCGTGCCCGAAGTGCAGGACCGCCTGGCCCAGGGCGCGAAGCTGGACGCCACCGCCTTCGACCGCACGCGCACGCGCAGGCTCGCCACCGGCGCCTTTGCCACGCTCGACAACCTGGTCGACACCGCGACCGGCACCGTCAAGGCCAAGGCCCGCTTCTCCAATGCCGACAACACACTGTTCCCGAACCAGTTCGTCAACCTGCGGCTGCTGCTGCGCACCGTGGACAGCGCGGTGGTGGTGCCTGTGACGGCACTGCGCCACGGGCCCAACGGCGACTATGTATATGTGCTGAAGGACGACAGCACCGTGGCGCAGCGCACGGTGACGCGCGGCGAGGCCAGCGTCGACAACGTCGCGATCATGTCCGGCCTGACGGCGGGCGAGCAGGTCGTGACCGAGGGCGGCGACCGCCTGAAGGACGGCGCGCGGGTGCAGACCACGGTCGACCGGCCGGCGGCGCCGCCCGCGGGCGCGGCCTCCGGGGAGCGCCGCGGGCATCGCGGCAACGGCGAGCGCGGAAGCGGCCGGCGCGAAGGCGGCGCGGCGGGTGCCGGCGCTCCCTCCGGCGGCGCCGGCGCGGGTACCGGTGCTGAAGGCGCGGGCACGCGGCAGCGTCCATCGTCGTCCGACTCGTCCACGCCTTCCGTGCCTCCGCCCGCGCCCGCCGTGCAGCCGGGCACACCGCCCGCCGCGCCCGGCGGCACGATGCGCTGA
PROTEIN sequence
Length: 513
MEQEKPTEPLPANVSPTHPPVRRRRWVGALLTLLLLAILGGGAWYLIQRAKTPAGAPGAAPGGRPGGPGGAGGPGARGGGGPGGPGGAATSTVGIATAKKADIPVQLEALGTVTPLANVVVQPQVSGVLTAVLFQEGQMVKKGDVLATIDPQPFQNALAQATGARQRDEAQLAAARVTLSRYQTLLGQDSIARQDVDTQAALVKQLEGTVAIDRANENTAKLNLTWSRITAPVSGRIGLRPVDAGNYISTGATNGIATITQITPIDVEFAIPQDRVPEVQDRLAQGAKLDATAFDRTRTRRLATGAFATLDNLVDTATGTVKAKARFSNADNTLFPNQFVNLRLLLRTVDSAVVVPVTALRHGPNGDYVYVLKDDSTVAQRTVTRGEASVDNVAIMSGLTAGEQVVTEGGDRLKDGARVQTTVDRPAAPPAGAASGERRGHRGNGERGSGRREGGAAGAGAPSGGAGAGTGAEGAGTRQRPSSSDSSTPSVPPPAPAVQPGTPPAAPGGTMR*