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SCNpilot_cont_300_bf_scaffold_329_curated

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_329_curated_1
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

Not on your lists

459..1604
DNA (1146bp) protein (382aa)
Divergent AAA domain family id=2114640 bin=GWB2_Nitrospirae_rel_47_37 species=Clostridium botulinum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
transcriptional regulator with HTH domain
Tax=RBG_16_Chloroflexi_50_9_curated
SCNpilot_cont_300_bf_scaffold_329_curated_2
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1740..2927
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IC80_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA89905.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_329_curated_3
unknown

Not on your lists

comp(3423..4295)
DNA (873bp) protein (291aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_329_curated_4
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4312..5607)
DNA (1296bp) protein (432aa)
Site-specific recombinase, phage integrase family n=1 Tax=Burkholderia multivorans CF2 RepID=J4JKQ1_9BURK
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EJO58086.1}; TaxID=985078 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CF2.;"
Phage integrase
SCNpilot_cont_300_bf_scaffold_329_curated_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5848..8445
DNA (2598bp) protein (866aa)
DNA mismatch repair protein MutS n=1 Tax=Variovorax sp. CF313 RepID=J2K315_9BURK
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
DNA mismatch repair protein muts; K03555 DNA mismatch repair protein MutS
SCNpilot_cont_300_bf_scaffold_329_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8474..9313
DNA (840bp) protein (280aa)
20S proteasome A and B subunits n=2 Tax=Variovorax paradoxus RepID=C5CTL9_VARPS
putative proteasome subunit
20S proteasome A and B subunits {ECO:0000313|EMBL:ACS20207.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_329_curated_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9319..10119
DNA (801bp) protein (267aa)
alpha/beta hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI00036A51E2
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ADU38306.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_329_curated_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10135..11607)
DNA (1473bp) protein (491aa)
Putative amidase n=1 Tax=Variovorax paradoxus B4 RepID=T1XCY1_VARPD
putative amidase
Putative amidase {ECO:0000313|EMBL:AGU50792.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_329_curated_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11713..12057)
DNA (345bp) protein (115aa)
Putative branched-chain amino acid transport protein, AzlD family n=1 Tax=Variovorax paradoxus B4 RepID=T1XE10_VARPD
putative branched-chain amino acid transport protein, AzlD family
Putative branched-chain amino acid transport protein, AzlD family {ECO:0000313|EMBL:AGU50793.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_329_curated_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12057..12767)
DNA (711bp) protein (237aa)
Putative branched-chain amino acid permease, AzlC family n=1 Tax=Variovorax paradoxus B4 RepID=T1XEN6_VARPD
putative branched-chain amino acid permease, AzlC family
Putative branched-chain amino acid permease, AzlC family {ECO:0000313|EMBL:AGU50794.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_329_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12794..14431)
DNA (1638bp) protein (546aa)
Putative glutathione ABC transporter, ATP-binding protein GsiA n=1 Tax=Variovorax paradoxus B4 RepID=T1XFA3_VARPD
gsiA1; putative glutathione ABC transporter, ATP-binding protein GsiA
Putative glutathione ABC transporter, ATP-binding protein GsiA {ECO:0000313|EMBL:AGU50795.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_329_curated_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14444..15316)
DNA (873bp) protein (291aa)
Putative peptide ABC transporter, permease protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XE64_VARPD
putative peptide ABC transporter, permease protein
Putative peptide ABC transporter, permease protein {ECO:0000313|EMBL:AGU50796.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_329_curated_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15330..16271)
DNA (942bp) protein (314aa)
Putative peptide ABC transporter, permease protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XCY4_VARPD
putative peptide ABC transporter, permease protein
Putative peptide ABC transporter, permease protein {ECO:0000313|EMBL:AGU50797.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_329_curated_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16276..17886)
DNA (1611bp) protein (537aa)
Putative peptide ABC transporter, peptide-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XE14_VARPD
Putative peptide ABC transporter, peptide-binding protein {ECO:0000313|EMBL:AGU50798.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
putative peptide ABC transporter, peptide-binding protein
SCNpilot_cont_300_bf_scaffold_329_curated_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17990..19459
DNA (1470bp) protein (490aa)
Transcriptional regulator, GntR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XEN8_VARPD
transcriptional regulator, GntR family
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AGU50799.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_329_curated_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19491..19871
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2K319_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL74545.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ycii-like protein
SCNpilot_cont_300_bf_scaffold_329_curated_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19917..20543
DNA (627bp) protein (209aa)
acetyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00035C9DE9
Acetyltransferase {ECO:0000313|EMBL:EJL74547.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
GCN5-like N-acetyltransferase
SCNpilot_cont_300_bf_scaffold_329_curated_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20586..21290
DNA (705bp) protein (235aa)
LuxR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003649820
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EJL74548.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
two component LuxR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_329_curated_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21377..23116
DNA (1740bp) protein (580aa)
histidine kinase n=1 Tax=Variovorax paradoxus RepID=UPI0003612135
Variovorax paradoxus strain MEDvA23 contig_53, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27711.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
histidine kinase
SCNpilot_cont_300_bf_scaffold_329_curated_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23128..23952)
DNA (825bp) protein (275aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
undecaprenyl pyrophosphate phosphatase (EC:3.6.1.27); K06153 undecaprenyl-diphosphatase [EC:3.6.1.27]
Undecaprenyl-diphosphatase n=1 Tax=Variovorax sp. CF313 RepID=J3CMN3_9BURK
SCNpilot_cont_300_bf_scaffold_329_curated_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24109..24993
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037A775B
Uncharacterized protein {ECO:0000313|EMBL:EJL74552.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_329_curated_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24985..25626)
DNA (642bp) protein (214aa)
Asp/Glu/Hydantoin racemase n=1 Tax=Variovorax sp. CF313 RepID=J2KNA5_9BURK
Asp/Glu/Hydantoin racemase {ECO:0000313|EMBL:EJL74553.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Asp/Glu racemase
SCNpilot_cont_300_bf_scaffold_329_curated_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25640..26554)
DNA (915bp) protein (305aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Variovorax sp. CF313 RepID=J3CMD6_9BURK
Periplasmic component of amino acid ABC-type transporter/signal transduction system {ECO:0000313|EMBL:EJL74554.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
family 3 extracellular solute-binding protein; K10001 glutamate/aspartate transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_329_curated_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26608..27942)
DNA (1335bp) protein (445aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035CEFAD
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000313|EMBL:EJL74555.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative aminotransferase, class 3
SCNpilot_cont_300_bf_scaffold_329_curated_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28087..28953
DNA (867bp) protein (289aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J3CMN5_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL74556.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
RpiR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_329_curated_26
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28972..29667)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036D860E
GntR family transcriptional regulator; K11475 GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABQ70662.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_329_curated_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30009..30374
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036A1D18
SPW repeat protein {ECO:0000313|EMBL:EJL74557.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_329_curated_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30435..31928)
DNA (1494bp) protein (498aa)
Outer membrane efflux protein, NodT family n=1 Tax=Variovorax paradoxus B4 RepID=T1XFB9_VARPD
outer membrane efflux protein, NodT family
Outer membrane efflux protein, NodT family {ECO:0000313|EMBL:AGU50810.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_329_curated_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31939..35229)
DNA (3291bp) protein (1097aa)
nodulation protein n=1 Tax=Variovorax paradoxus RepID=UPI000375C2F7
Acriflavin resistance protein {ECO:0000313|EMBL:ADU38320.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
acriflavin resistance protein; K07789 RND superfamily, multidrug transport protein MdtC
SCNpilot_cont_300_bf_scaffold_329_curated_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35264..38380)
DNA (3117bp) protein (1039aa)
acriflavin resistance protein n=1 Tax=Variovorax paradoxus RepID=UPI0003634A04
Variovorax paradoxus strain MEDvA23 contig_68, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25553.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
acriflavin resistance protein; K07788 RND superfamily, multidrug transport protein MdtB
Displaying items 1-30 of 60 in total

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