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SCNpilot_cont_300_bf_scaffold_948_curated_11

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 11288..11920

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Variovorax sp. CF313 RepID=J3CJS6_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 82.4
  • Coverage: 210.0
  • Bit_score: 334
  • Evalue 1.00e-88
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJL72916.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.4
  • Coverage: 210.0
  • Bit_score: 334
  • Evalue 1.40e-88
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 73.8
  • Coverage: 210.0
  • Bit_score: 301
  • Evalue 1.80e-79

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 633
ATGCGCGACCTCGTTCAGGAACTGGTAGCTCACTATGCGGACTTGCGCCGGCAGTTGACTCGCGACCTGAGGGATCCCCACTACGCGGCCGACATCGCGCAGTCGAGCTTCGAGCGGGTGTTCGCACAGGCCACGAAGTCGCTCGGCGCGGCCCGCGGTACCGGCGCCGAAGTGGCGGCACCGGATGACGCGAAGGACGCCGGCAGCGGTATCGAATCGCCCCGCGCCCTGCTCTTTCGCGTGGCCCGCAACCTGTGCATCGACGATGCGCGCCGCCGCAAGGTGGCGCAGGAATGGGTCGGCACGCATGCCGCCATCGGCACGCACCTCGTGGCGCCGTCCAGCGAATTCATCCTGGCGCAGCAGCGTGTGCTGGCGCGGGTGGTCGAGACCATGGAAAAACTCCCGCCGCGGCGGCGCCAGGTGTTCCTGCTGTTTCGCGCCTACGGCCACACGCGCGCGGAGATCGCGCAGCAGTTGGACATCACCGAGATGGCCGTGGCCAAGCACCTGCTGCGCGCCACCATCGATTGCTCGCGGGTGTTCGCCGAGCTGCGCGCCGAGCTGATCGAGCCGCAGCACGTGCAGAACCACGCCGGCTTCGATACTGCGCTGGCCGAAGACTTCTCGTGA
PROTEIN sequence
Length: 211
MRDLVQELVAHYADLRRQLTRDLRDPHYAADIAQSSFERVFAQATKSLGAARGTGAEVAAPDDAKDAGSGIESPRALLFRVARNLCIDDARRRKVAQEWVGTHAAIGTHLVAPSSEFILAQQRVLARVVETMEKLPPRRRQVFLLFRAYGHTRAEIAQQLDITEMAVAKHLLRATIDCSRVFAELRAELIEPQHVQNHAGFDTALAEDFS*