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SCNpilot_cont_300_bf_scaffold_948_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_948_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..486)
DNA (486bp) protein (162aa)
Phosphonoacetate hydrolase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5Q0_VARPE
phosphonoacetate hydrolase
Phosphonoacetate hydrolase {ECO:0000313|EMBL:ADU35947.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_948_curated_2
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(546..1856)
DNA (1311bp) protein (437aa)
major facilitator transporter n=1 Tax=Variovorax paradoxus RepID=UPI00036B8F97
Major facilitator transporter {ECO:0000313|EMBL:EYS93386.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
phnB; 2-phosphonopropionate transporter; K02445 MFS transporter, OPA family, glycerol-3-phosphate transporter
SCNpilot_cont_300_bf_scaffold_948_curated_3
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1953..3044)
DNA (1092bp) protein (364aa)
mdh1; NAD-dependent methanol dehydrogenase Mdh (EC:1.1.1.244)
NAD-dependent methanol dehydrogenase Mdh {ECO:0000313|EMBL:AEI79765.1}; EC=1.1.1.244 {ECO:0000313|EMBL:AEI79765.1};; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
alcohol dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI0003772ADE
SCNpilot_cont_300_bf_scaffold_948_curated_4
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3257..4123
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036E6BFD
LysR family transcriptional regulator {ECO:0000313|EMBL:EYS93388.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_948_curated_5
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4195..4737)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037D6380
ferric uptake regulator family protein
Ferric uptake regulator family {ECO:0000313|EMBL:CAD84641.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_cont_300_bf_scaffold_948_curated_6
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4813..6492)
DNA (1680bp) protein (560aa)
Cyclic peptide transporter n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BM30_DELAS
cyclic peptide transporter; K06160 putative ATP-binding cassette transporter
Cyclic peptide transporter {ECO:0000313|EMBL:ABX37375.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCNpilot_cont_300_bf_scaffold_948_curated_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6534..6773)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000373E9BA
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26801.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_948_curated_8
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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6951..7703
DNA (753bp) protein (251aa)
Ferric iron reductase protein FhuF n=1 Tax=Thauera phenylacetica B4P RepID=N6ZXN4_9RHOO
Ferric iron reductase protein FhuF {ECO:0000313|EMBL:ENO99103.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
putative ferric iron reductase
SCNpilot_cont_300_bf_scaffold_948_curated_9
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7769..9853
DNA (2085bp) protein (695aa)
Alpha/beta hydrolase domain-containing protein n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AUV5_DELSC
Esterase {ECO:0000313|EMBL:KEH09760.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
alpha/beta hydrolase domain-containing protein
SCNpilot_cont_300_bf_scaffold_948_curated_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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9835..11151
DNA (1317bp) protein (439aa)
L-lysine 6-monooxygenase (NADPH) (EC:1.14.13.59); K03897 lysine N6-hydroxylase [EC:1.14.13.59]
L-lysine 6-monooxygenase (NADPH) n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7Z9_NITMU
Ornithine monooxygenase {ECO:0000313|EMBL:KIO49787.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_300_bf_scaffold_948_curated_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11288..11920
DNA (633bp) protein (211aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Variovorax sp. CF313 RepID=J3CJS6_9BURK
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJL72916.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_948_curated_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11929..12996
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036530B1
Fe2+-dicitrate sensor, membrane component {ECO:0000313|EMBL:EJL72915.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
anti-FecI sigma factor FecR
SCNpilot_cont_300_bf_scaffold_948_curated_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13123..15513
DNA (2391bp) protein (797aa)
TonB-dependent siderophore receptor n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9K1_VARPE
TonB-dependent siderophore receptor {ECO:0000313|EMBL:ADU35049.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
tonb-dependent siderophore receptor
SCNpilot_cont_300_bf_scaffold_948_curated_14
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15623..20125)
DNA (4503bp) protein (1501aa)
Uncharacterized protein (Fragment) n=1 Tax=Pseudomonas aeruginosa BWHPSA019 RepID=U8RTE2_PSEAI
Amino acid adenylation domain protein {ECO:0000313|EMBL:EZP45284.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
amino acid adenylation domain-containing protein
Displaying 14 items

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