ggKbase home page

SCNpilot_cont_300_bf_scaffold_83_curated_82

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(85921..87393)

Top 3 Functional Annotations

Value Algorithm Source
RND transporter n=1 Tax=Variovorax paradoxus RepID=UPI00036D9544 similarity UNIREF
DB: UNIREF100
  • Identity: 92.7
  • Coverage: 491.0
  • Bit_score: 878
  • Evalue 2.60e-252
Efflux transporter, outer membrane factor lipoprotein, NodT family {ECO:0000313|EMBL:EJL69748.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.7
  • Coverage: 491.0
  • Bit_score: 876
  • Evalue 2.40e-251
NodT family RND efflux system outer membrane lipoprotein similarity KEGG
DB: KEGG
  • Identity: 90.2
  • Coverage: 500.0
  • Bit_score: 864
  • Evalue 1.60e-248

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1473
ATGACTGATTCCCTCGCCGTGCGCGCGCTGCGTCGCACTCCCGTCGTGGCTGCCGCGCTGCTGGTGGTCGCATTGGCAGGCTGCGCCGACATGGCCGGCATCGGCTCGCAGGCCAAGCTGCGCGACGCCTCGTCGCTGGGCATCGCGCCCGACAGCGCCGCGGCGCCGGTGTCCCGCCTCGACAGCCAGTGGTGGCTCGCCTTCGGCGATCCGCAGCTCAACTCGCTGATCGACCAGGCCGTGGCAGGCAATCCCAACCTGCAGGTCGCGCAGGCCCGCCTCGTGCGCGCGCAGGCTTCCGCCGACGTGGCCGGCGCGGCCCTCAAGCCCAAGGTCAACGGCGAGCTCGACCTGAACCGCCAGAAGTTCAACAGCAACTACATCTACCCGGCGCCGCTGGGCGGCTCGATCCAGAACATCGGCCTGCTGCAGCTCGGCGCGAGCTGGGAACTCGACTTCTTCGGCAAGAACCGCAGCGCGCTCGACACCGCCATCGGTGCAGCCAATGCCGCCGCCGCCGATGCCGACGCCGCCCGCGTGCTGCTCGCGAGCAACGTGGCGCGCAGCTACTTCCAGTGGGCCCGCCTGAACGACCAGCTCACCGTGGCCAAGCGCACGCTGGCGCAGCGCGACGAAACACTCAAGCTCGTGCGCGACCGCGTCTCGGCCGGCCTCGACACCCGCCTCGAACTGCGCCAGAGCGAAGGCGGCCTGCCCGAGGCACGCCAGCAGATCGAATCGCTCAACGAGCAGATCGCGCTGCAGCAGCATGCGCTCGACGCGCTCGTGGCCCAGCCCAATGTGTCGCAATCGCTCAAGCCGCCGCTGCTGGGCGAGGTCAAGCCGATCGCGCTGCAGACGAACATCCCGGCCGACCTGCTGGGCCGCCGCGCCGACATCGCAGCCGCGCGCTGGCGCGTCGAGGCCGCCACCAGCGACGTGGCCAATGCCAAGACGCTGTTCTATCCGAACGTGAACCTCACGGCCTTCGCCGGCTTCCAGGCGCTGGGCTTCGGCAAGCTGCTGAAGTCGGGCAGCGAGCAGTGGGGCGTGGGCCCCGCCATCAGCCTGCCGATCTTCGAAGGCGGCAAGCTGCGCGCCAACCTGCGCGGCAAGTCGGCCGACCTGGACGTGGCCATCGAAAGCTACAACGCCACCGTCATCGACGCCGTGCGCGACGCGGCCGACCAGGTGACGAGCGCGCAGTCCATCGCGCGCCAGCAGACCGAACAACGCGCCGCGCAGACCGCTGCCGAAGGCGCCTACGACATCGCCGTGCAGCGCTACCGCGCCGGCCTCGGCAACTACCTCAATGTGCTGACGGCGGAAACCTCCGTGCTGGCGCAACGCCGCCTGGCGGTCGACCTCGCCGCGCGCGCGCTCGACACGCAGGTGGCGCTGGCCCGTGCCCTGGGTGGCGGCTGGCAGCCGCCGGCCACCACCACGGCTTCGGCCCCGGCCGCGCTGAACTGA
PROTEIN sequence
Length: 491
MTDSLAVRALRRTPVVAAALLVVALAGCADMAGIGSQAKLRDASSLGIAPDSAAAPVSRLDSQWWLAFGDPQLNSLIDQAVAGNPNLQVAQARLVRAQASADVAGAALKPKVNGELDLNRQKFNSNYIYPAPLGGSIQNIGLLQLGASWELDFFGKNRSALDTAIGAANAAAADADAARVLLASNVARSYFQWARLNDQLTVAKRTLAQRDETLKLVRDRVSAGLDTRLELRQSEGGLPEARQQIESLNEQIALQQHALDALVAQPNVSQSLKPPLLGEVKPIALQTNIPADLLGRRADIAAARWRVEAATSDVANAKTLFYPNVNLTAFAGFQALGFGKLLKSGSEQWGVGPAISLPIFEGGKLRANLRGKSADLDVAIESYNATVIDAVRDAADQVTSAQSIARQQTEQRAAQTAAEGAYDIAVQRYRAGLGNYLNVLTAETSVLAQRRLAVDLAARALDTQVALARALGGGWQPPATTTASAPAALN*