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SCNpilot_cont_300_bf_scaffold_399_curated_22

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 16399..17268

Top 3 Functional Annotations

Value Algorithm Source
LuxR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003697824 similarity UNIREF
DB: UNIREF100
  • Identity: 55.0
  • Coverage: 240.0
  • Bit_score: 230
  • Evalue 2.90e-57
Variovorax paradoxus strain MEDvA23 contig_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31544.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.2
  • Coverage: 240.0
  • Bit_score: 227
  • Evalue 2.60e-56
two component LuxR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 53.8
  • Coverage: 240.0
  • Bit_score: 226
  • Evalue 9.90e-57

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 870
ATGCGGATCAAGCGCCGCGCGAAGCCGTATCGCAAGAATCGGCTCACGAACCACAACAAGCATCCGGCCCCGGACATGACCCCACTCCACCCGGCAACGCTGACGCGCGGCGCTCCGCAATGGCTTGCGAAATTCGAGGGCACGCACCCACGGAACATCGATCGGATTCCGAACGCCCCATGGCCTGCCTTCCTGGCCGGCCAGGCGGACAAGCCGGTCCGCGTGCTGCTGATCGACGAGGACGAAGGGTCCAGGCGCGCGGTCGTTCATGAACTGGTCTCGGACCCGCGTGTATGCGTCGTCGGCGAAGCCGGCAGCCTGCAGGAAGCCAGGCGCATGTTGTCGCAGCAGGAATTCGATGTGCTGATCCTCGACGTCCGGCTCGGCGGCGGCAAGGGGTTCGACCTGATCGGGACGGCCAAGGCCCATTGCAGCCGGGCCGAGGTCATCGTGCACTCCACGCTGGCCGACGAGGCCCATGTGCGCCGGGCCTTCGCGGCGGGCGCGTCGGGCGCGTCGGGCTATCTCGTCAAGAACTCCTGGTTTCAGGATTTCAGTCAATCCGTGCTGCAGGTCGTCAACGGCGGGGCGGCGGTCTCGCCCGACGTGGTACGGCACCTGCTCGTCCGGTGGGGCGCTTTCGCGCCCGCGCGGTCTTGCGACGATGCCGCTGCCCGCAAGATGCTCTCGGCCAGGGAGCGCGAGGTGCTGCGACTCGTGGCCGAGGGCAAGGTCACGCAGGAGATCGCTTGTCTCCTGTCGATCAGCGGACGCACGGTCTGCGCGCACATGAAGAGCATCCTGCACAAGCTGCAGGTGCGTACACGCGCGCATGCCGTGATCGCGGCCGTCGACCAGCGGCTGCTGTAG
PROTEIN sequence
Length: 290
MRIKRRAKPYRKNRLTNHNKHPAPDMTPLHPATLTRGAPQWLAKFEGTHPRNIDRIPNAPWPAFLAGQADKPVRVLLIDEDEGSRRAVVHELVSDPRVCVVGEAGSLQEARRMLSQQEFDVLILDVRLGGGKGFDLIGTAKAHCSRAEVIVHSTLADEAHVRRAFAAGASGASGYLVKNSWFQDFSQSVLQVVNGGAAVSPDVVRHLLVRWGAFAPARSCDDAAARKMLSAREREVLRLVAEGKVTQEIACLLSISGRTVCAHMKSILHKLQVRTRAHAVIAAVDQRLL*