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SCNpilot_cont_300_bf_scaffold_399_curated

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_399_curated_1
unknown

Not on your lists

2..100
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_399_curated_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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133..558
DNA (426bp) protein (142aa)
heat shock protein Hsp20 n=1 Tax=Variovorax paradoxus RepID=UPI000371A8E8
Molecular chaperone (Small heat shock protein) {ECO:0000313|EMBL:EJL80413.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hsp20; putative heat shock protein Hsp20
SCNpilot_cont_300_bf_scaffold_399_curated_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

635..1561
DNA (927bp) protein (309aa)
Deacetylase, histone deacetylase/acetoin utilization protein n=1 Tax=Variovorax sp. CF313 RepID=J3CXC3_9BURK
Deacetylase, histone deacetylase/acetoin utilization protein {ECO:0000313|EMBL:EJL80414.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
histone deacetylase superfamily protein
SCNpilot_cont_300_bf_scaffold_399_curated_4
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1614..3350)
DNA (1737bp) protein (579aa)
actetate permease n=1 Tax=Variovorax paradoxus RepID=UPI00037F8330
Acetate transporter ActP {ECO:0000313|EMBL:EWS65932.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
actP; cation/acetate symporter ActP; K14393 cation/acetate symporter
SCNpilot_cont_300_bf_scaffold_399_curated_5
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3347..3664)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036C6F87
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGJ09277.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
SCNpilot_cont_300_bf_scaffold_399_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3786..5762
DNA (1977bp) protein (659aa)
acetate/CoA ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1]
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
acetyl-CoA synthetase n=1 Tax=Variovorax paradoxus RepID=UPI00035CF379
SCNpilot_cont_300_bf_scaffold_399_curated_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5772..6665)
DNA (894bp) protein (298aa)
beta-lactamase n=1 Tax=Variovorax paradoxus RepID=UPI000365D3BE
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:EJL78992.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
metallo-beta-lactamase superfamily protein
SCNpilot_cont_300_bf_scaffold_399_curated_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6753..7076
DNA (324bp) protein (108aa)
ArsR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000362AE92
Putative transcriptional regulator {ECO:0000313|EMBL:EJL78991.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ArsR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_399_curated_9
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7076..7510
DNA (435bp) protein (145aa)
YeeE/YedE family protein n=1 Tax=Variovorax paradoxus RepID=UPI0003620F09
YeeE/YedE {ECO:0000313|EMBL:KIF79960.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
hypothetical protein; K07112
SCNpilot_cont_300_bf_scaffold_399_curated_10
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7522..7944
DNA (423bp) protein (141aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI0003631B0B
transmembrane protein; K07112
Putative transporter component {ECO:0000313|EMBL:EWS61929.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
SCNpilot_cont_300_bf_scaffold_399_curated_11
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7947..8213)
DNA (267bp) protein (89aa)
universal stress protein UspA n=1 Tax=Variovorax paradoxus RepID=UPI000361FBAC
Universal stress protein {ECO:0000256|PIRNR:PIRNR006276}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
putative universal stress protein
SCNpilot_cont_300_bf_scaffold_399_curated_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8831..9292
DNA (462bp) protein (154aa)
universal stress protein UspA n=1 Tax=Variovorax paradoxus RepID=UPI0003824946
Universal stress protein {ECO:0000256|PIRNR:PIRNR006276}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative universal stress protein
SCNpilot_cont_300_bf_scaffold_399_curated_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9335..9958
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035D40AE
Uncharacterized protein {ECO:0000313|EMBL:EJL80420.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_399_curated_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9990..10211
DNA (222bp) protein (74aa)
transporter n=1 Tax=Variovorax paradoxus RepID=UPI00037BE655
Putative periplasmic or secreted lipoprotein {ECO:0000313|EMBL:EJL76432.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transport-associated
SCNpilot_cont_300_bf_scaffold_399_curated_15
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10335..10775
DNA (441bp) protein (147aa)
Universal stress protein UspA-like protein n=1 Tax=Polaromonas sp. CF318 RepID=J3DBD7_9BURK
Universal stress protein UspA-like protein {ECO:0000313|EMBL:EJL88486.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
UspA domain-containing protein
SCNpilot_cont_300_bf_scaffold_399_curated_16
unknown

Not on your lists

10883..11032
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_399_curated_17
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11066..11782
DNA (717bp) protein (239aa)
ABC-type antimicrobial peptide transport system, ATPase component n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IR41_9BURK
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:EIF33193.1}; Flags: Precursor;; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
export system ATP-binding subunit; K02003 putative ABC transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_399_curated_18
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11779..12864
DNA (1086bp) protein (362aa)
Multidrug resistance efflux pump n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IR42_9BURK
Multidrug resistance efflux pump {ECO:0000313|EMBL:EIF33194.1}; Flags: Precursor;; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
export system membrane fusion protein; K02005 HlyD family secretion protein
SCNpilot_cont_300_bf_scaffold_399_curated_19
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12861..14360
DNA (1500bp) protein (500aa)
RND transporter n=1 Tax=Pseudomonas fluorescens RepID=UPI000375DF38
RND transporter {ECO:0000313|EMBL:EXF94477.1}; TaxID=1042209 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens HK44.;"
RND efflux system outer membrane lipoprotein
SCNpilot_cont_300_bf_scaffold_399_curated_20
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14357..15499
DNA (1143bp) protein (381aa)
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IR44_9BURK
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component {ECO:0000313|EMBL:EIF33196.1}; Flags: Precursor;; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
antimicrobial peptide ABC transporter permease; K02004 putative ABC transport system permease protein
SCNpilot_cont_300_bf_scaffold_399_curated_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15544..16080)
DNA (537bp) protein (179aa)
Putative phosphoesterase, PAP2 superfamily n=1 Tax=Variovorax paradoxus B4 RepID=T1X7U1_VARPD
putative phosphoesterase, PAP2 superfamily
Putative phosphoesterase, PAP2 superfamily {ECO:0000313|EMBL:AGU48404.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_399_curated_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16399..17268
DNA (870bp) protein (290aa)
LuxR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003697824
Variovorax paradoxus strain MEDvA23 contig_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31544.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
two component LuxR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_399_curated_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17275..18132)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003771C7C
Universal stress protein UspA-like protein {ECO:0000313|EMBL:EJL76418.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative universal stress protein
SCNpilot_cont_300_bf_scaffold_399_curated_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18129..18518)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000364AD80
Uncharacterized protein {ECO:0000313|EMBL:EJL76419.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_399_curated_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18708..21080
DNA (2373bp) protein (791aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phosphoketolase (EC:4.1.2.9); K01621 phosphoketolase [EC:4.1.2.9]
phosphoketolase n=1 Tax=Variovorax paradoxus RepID=UPI000366BFFA
SCNpilot_cont_300_bf_scaffold_399_curated_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21182..21910
DNA (729bp) protein (243aa)
chemotaxis protein CheY n=1 Tax=Variovorax paradoxus RepID=UPI0003677BE5
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EJL76421.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
two component transcriptional regulator, winged helix family
SCNpilot_cont_300_bf_scaffold_399_curated_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21903..24020
DNA (2118bp) protein (706aa)
histidine kinase n=1 Tax=Variovorax paradoxus RepID=UPI000365C2C9
PAS domain S-box {ECO:0000313|EMBL:EJL76422.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
multi-sensor hybrid histidine kinase
SCNpilot_cont_300_bf_scaffold_399_curated_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24042..24809)
DNA (768bp) protein (256aa)
cAMP-binding protein n=1 Tax=Variovorax sp. CF313 RepID=J2KTQ9_9BURK
cAMP-binding protein {ECO:0000313|EMBL:EJL76423.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transcriptional regulator, Crp/Fnr family
SCNpilot_cont_300_bf_scaffold_399_curated_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25045..25548
DNA (504bp) protein (168aa)
ornithine carbamoyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00036CC2A6
Ornithine carbamoyltransferase {ECO:0000313|EMBL:EJL76424.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative ornithine carbamoyltransferase
SCNpilot_cont_300_bf_scaffold_399_curated_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25685..26338
DNA (654bp) protein (218aa)
OsmY domain-containing protein n=1 Tax=Variovorax paradoxus RepID=UPI00036B5DB4
Putative periplasmic or secreted lipoprotein {ECO:0000313|EMBL:EJL76425.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative periplasmic phospholipid-binding protein
Displaying items 1-30 of 61 in total

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