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SCNpilot_cont_300_bf_scaffold_526_curated_5

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(2884..3768)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, LysR family n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y4S9_LEPCP similarity UNIREF
DB: UNIREF100
  • Identity: 62.6
  • Coverage: 294.0
  • Bit_score: 362
  • Evalue 3.70e-97
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 62.6
  • Coverage: 294.0
  • Bit_score: 362
  • Evalue 1.20e-97
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACB34642.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.6
  • Coverage: 294.0
  • Bit_score: 362
  • Evalue 5.30e-97

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Taxonomy

Leptothrix cholodnii → Leptothrix → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 885
ATGACGCTCGTACAACTTCGGCACTTGATTTCGCTGGCGGAGACCGCTTCGTTCACGCGATCGGCCGAGACGCTCTTCCTGACACAGCCGGCGTTGAGCCGAAGCATCAACGCATTGGAAGAGGAGCTGGGCCAGAAGCTTTTCGACCGTGTCGGAAGACGCAGCGAACTCACGCATTTCGGGCACGAGGTATTGCAACGGGCGCGCAGACTGGTGTTCGACGCCGATGAACTCGCGGCATCCGGAGGGCGCAAGCTCGGCGGCCGCACCAGCACCTTGCGCGTGGGTCTCGGGTCCGGGCCGGGCGCATTGCTGACCAGACCGCTGCTGGCCGGCATGGCGCAGCGAGGTGCAACGGTGCGCGTCGACATTCTTCGCGGTGAAGAGAACCGGCTCGTCCAAGCGCTTCGAGACCGCCAGATCGATGCAGTGGTCCTCGAAATCCACTCGTTCAGGCCGGCAACGGACCTGCGCGTCGAGGCCGTGACTGAGATGCGGGGGGCCTTCATGTGCAGGACCGGCCACCCCCTCACGCGCAAGCGCGGAGCAATACGCTTCGAGACCGTGCGCGAGTTCCCGATCGCCTCGACAAAGCTGGGCAACGACGTGGTGCGCGAGATGGTCGAGACCTATGGTCCGCAAGGACATCCCGACGAATGCGTGAGCCTGCGCTGCAACGAATTGTCGAGTCTGGTCGAGGTCGTACGGGAGAGCGACGCGGTTCTATTCGCGATCCGGGCAGCCGCGCCGGACCTGGTGGAACTGCCTGTGCGGCCAGCAATAGAGACCCGCGCGCACTTCGGCCTGATCACGCGTGCGGGACATACGGACGCGCCCGCCATGTCGATGTTGCGCACGCTGATCTCGAAGATACTGCGCGACTGA
PROTEIN sequence
Length: 295
MTLVQLRHLISLAETASFTRSAETLFLTQPALSRSINALEEELGQKLFDRVGRRSELTHFGHEVLQRARRLVFDADELAASGGRKLGGRTSTLRVGLGSGPGALLTRPLLAGMAQRGATVRVDILRGEENRLVQALRDRQIDAVVLEIHSFRPATDLRVEAVTEMRGAFMCRTGHPLTRKRGAIRFETVREFPIASTKLGNDVVREMVETYGPQGHPDECVSLRCNELSSLVEVVRESDAVLFAIRAAAPDLVELPVRPAIETRAHFGLITRAGHTDAPAMSMLRTLISKILRD*