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SCNpilot_cont_300_bf_scaffold_526_curated

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_526_curated_1
unknown

Not on your lists

2..199
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_526_curated_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

666..1370
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V1K0_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU35656.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_526_curated_3
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1411..2331)
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037D34CA
Uncharacterized protein {ECO:0000313|EMBL:EJE50827.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
SCNpilot_cont_300_bf_scaffold_526_curated_4
Xanthomonas sp. Nyagatare, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2370..2834)
DNA (465bp) protein (155aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QB87_ACIAP
Uncharacterized protein {ECO:0000313|EMBL:KGK57624.1}; TaxID=1552758 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sp. Nyagatare.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_526_curated_5
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2884..3768)
DNA (885bp) protein (295aa)
Transcriptional regulator, LysR family n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y4S9_LEPCP
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACB34642.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_cont_300_bf_scaffold_526_curated_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3939..5249
DNA (1311bp) protein (437aa)
amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32]
Amidohydrolase n=1 Tax=Variovorax sp. CF313 RepID=J2KFM5_9BURK
Amidohydrolase {ECO:0000313|EMBL:EJL71943.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_526_curated_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5322..7736
DNA (2415bp) protein (805aa)
DNA polymerase {ECO:0000256|RuleBase:RU000442}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU000442};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
polB; DNA polymerase II (EC:2.7.7.7)
DNA polymerase n=1 Tax=Variovorax paradoxus B4 RepID=T1XM12_VARPD
SCNpilot_cont_300_bf_scaffold_526_curated_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7749..9104)
DNA (1356bp) protein (452aa)
Putative xenobiotic (Desulfurization)monooxygenase subunit A, NtaA/SnaA/SoxA/DszA family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CVA7_VARPS
xenobiotic (desulfurization)monooxygenase subunit A
Putative xenobiotic (Desulfurization)monooxygenase subunit A, NtaA/SnaA/SoxA/DszA family {ECO:0000313|EMBL:ACS18556.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_526_curated_9
Paenibacillus sp. JCM 10914, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9320..10738
DNA (1419bp) protein (473aa)
xenobiotic compound monooxygenase subunit A n=1 Tax=Paenibacillus sp. JC66 RepID=UPI0002898EFD
xenobiotic compound monooxygenase subunit A
Nitrilotriacetate monooxygenase component A {ECO:0000313|EMBL:GAE05777.1}; TaxID=1236974 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. JCM 10914.;"
SCNpilot_cont_300_bf_scaffold_526_curated_10
Paenibacillus sp. JCM 10914, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10728..11522
DNA (795bp) protein (265aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Paenibacillus sp. JCM 10914 RepID=V9G7E1_9BACL
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:GAE05778.1}; TaxID=1236974 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. JCM 10914.;"
binding-protein-dependent transport systems inner membrane component
SCNpilot_cont_300_bf_scaffold_526_curated_11
Paenibacillus lactis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11572..12597
DNA (1026bp) protein (342aa)
myristoyl transferase n=1 Tax=Paenibacillus sp. JC66 RepID=UPI000289570E
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:EHB66738.1}; Flags: Precursor;; TaxID=743719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus lactis 154.;"
NMT1/THI5 like domain-containing protein; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_526_curated_12
Paenibacillus sp. Y412MC10, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12613..13386
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Nocardia sp. BMG111209 RepID=UPI0003759317
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ACX67245.1}; TaxID=481743 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Geobacillus sp. (strain Y412MC10).;"
SCNpilot_cont_300_bf_scaffold_526_curated_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13373..13648
DNA (276bp) protein (92aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XJ77_VARPD
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU52165.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_526_curated_14
unknown

Not on your lists

comp(13755..14081)
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_526_curated_15
unknown

Not on your lists

14307..14504
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_526_curated_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14533..15120)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037762FF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU37969.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_526_curated_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15297..16769
DNA (1473bp) protein (491aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036A4D04
Variovorax paradoxus strain MEDvA23 contig_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ36252.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
LuxR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_526_curated_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16777..17649)
DNA (873bp) protein (291aa)
ABC transporter related n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CVA8_VARPS
Variovorax paradoxus strain MEDvA23 contig_33, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31381.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_526_curated_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17667..18482)
DNA (816bp) protein (272aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CVA9_VARPS
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACS18558.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_526_curated_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18479..19327)
DNA (849bp) protein (283aa)
sulfonate ABC transporter n=1 Tax=Variovorax paradoxus RepID=UPI0003717704
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACS18559.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_526_curated_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19344..20438)
DNA (1095bp) protein (365aa)
ABC sulfate ester transporter, periplasmic ligand binding protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CVB1_VARPS
ABC sulfate ester transporter periplasmic ligand binding protein; K02051 NitT/TauT family transport system substrate-binding protein
ABC sulfate ester transporter, periplasmic ligand binding protein {ECO:0000313|EMBL:ACS18560.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_526_curated_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20435..21952)
DNA (1518bp) protein (506aa)
Amidohydrolase 2 n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CVB2_VARPS
amidohydrolase 2
Amidohydrolase 2 {ECO:0000313|EMBL:ACS18561.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_526_curated_23
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22050..22886)
DNA (837bp) protein (279aa)
Putative dipeptide ABC transporter, ATP-binding protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TRZ2_TISMK
appF; putative dipeptide ABC transporter, ATP-binding protein
Putative dipeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AFK55530.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_300_bf_scaffold_526_curated_24
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22897..23748)
DNA (852bp) protein (284aa)
Nitroreductase n=1 Tax=Thauera phenylacetica B4P RepID=N6ZVI0_9RHOO
NfnB protein {ECO:0000313|EMBL:BAQ49011.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
nitroreductase
SCNpilot_cont_300_bf_scaffold_526_curated_25
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23745..24758)
DNA (1014bp) protein (338aa)
Putative peptide ABC transporter, ATP-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LRK0_RHITR
putative peptide ABC transporter, ATP-binding protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
SCNpilot_cont_300_bf_scaffold_526_curated_26
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24755..25597)
DNA (843bp) protein (281aa)
ABC transporter permease protein 1 n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TRZ4_TISMK
ddpC; ABC transporter permease protein 1
ABC transporter permease protein 1 {ECO:0000313|EMBL:AFK55532.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_300_bf_scaffold_526_curated_27
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25594..26631)
DNA (1038bp) protein (346aa)
Binding-protein dependent transport system inner membrane protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TRZ5_TISMK
DppB protein {ECO:0000313|EMBL:BAQ44573.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
ddpB; binding-protein dependent transport system inner membrane protein
SCNpilot_cont_300_bf_scaffold_526_curated_28
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26628..28226)
DNA (1599bp) protein (533aa)
Extracellular solute-binding protein family 5 n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TRZ6_TISMK
hbpA; extracellular solute-binding protein family 5
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:AFK55534.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_300_bf_scaffold_526_curated_29
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28286..29467)
DNA (1182bp) protein (394aa)
acyl-CoA dehydrogenase (EC:1.3.99.10); K00253 isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
Acyl-CoA dehydrogenase type 2 domain n=1 Tax=Burkholderia sp. H160 RepID=B5WJV8_9BURK
Acyl-CoA dehydrogenase type 2 domain {ECO:0000313|EMBL:EEA01306.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
SCNpilot_cont_300_bf_scaffold_526_curated_30
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29464..30834)
DNA (1371bp) protein (457aa)
N5,N10-methylene tetrahydromethanopterin reductase n=1 Tax=Burkholderia ubonensis RepID=UPI00016A3BBA
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family protein {ECO:0000313|EMBL:AIO39942.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
flavin-dependent oxidoreductase
Displaying items 1-30 of 34 in total

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