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SCNpilot_cont_300_bf_scaffold_189_curated_126

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 171035..171688

Top 3 Functional Annotations

Value Algorithm Source
HTH-type transcriptional regulator RutR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJ50_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 50.8
  • Coverage: 199.0
  • Bit_score: 209
  • Evalue 3.90e-51
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EHS49114.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 50.7
  • Coverage: 201.0
  • Bit_score: 209
  • Evalue 5.50e-51
tetracycline transcriptional regulator YcdC domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 50.8
  • Coverage: 199.0
  • Bit_score: 205
  • Evalue 2.30e-50

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Taxonomy

Rhizobium sp. PDO1-076 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 654
ATGCGCGACACCAAGACAACACGACCCCCGGCACCTGAAACCACCGCGGACAGGGAAATCAGGGCCGCCAACAAGCGCAAGATCCTCAAGGCGGCCAGCGAGGTGTTCGCGGCCAAGGGCTTCGACGGCGCGCGCATCGCCGAGATCGCTTCCGTGGCCGAGTTGCCCAAGGCCAACGTCTACTACTACTACGCCACCAAGGAAGACCTCTACAGCGCCACCTTCGCGCCGCTGCTGGAAGAGTGGGACAGCGCGCTGCGCATCCTCAAGGTCGAGACCGAGCCCGCGGTGGCGCTGCGCGCCTACGTGGAAGCCAAGCTCCGGCTGGGCCGCAAGAACCCGCTGGAGGCGCGGCTGTTCGCCAACGAGGTGGTGCGCGGCGGCACTTTTCTTTCGGCCGCCGACCGGGCGCACATCGCGCAGAGCACGGCAGCCAGCATCGAGGTGCTCGAAGCCTGGATGGCCGCCAAGAAGATCCGCAAGATCGACGCGCGCCACTTTCTCTTCATGCTCTGGGCCTCGACCCAGTTCTATGCCGACTACGAGCCCATCGTGAACGCGGTGCTGCAGGTGAAGAAACTCACGGCTGTGCACTACGAGCAGGCGCTCGAATGCATCGTGAGCACGGTGCTGGCGGGCGTGCTGCTCGACTGA
PROTEIN sequence
Length: 218
MRDTKTTRPPAPETTADREIRAANKRKILKAASEVFAAKGFDGARIAEIASVAELPKANVYYYYATKEDLYSATFAPLLEEWDSALRILKVETEPAVALRAYVEAKLRLGRKNPLEARLFANEVVRGGTFLSAADRAHIAQSTAASIEVLEAWMAAKKIRKIDARHFLFMLWASTQFYADYEPIVNAVLQVKKLTAVHYEQALECIVSTVLAGVLLD*