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SCNpilot_cont_300_bf_scaffold_984_curated_6

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 5975..6964

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator (Fragment) n=1 Tax=Acidovorax sp. CF316 RepID=J0UDD2_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 76.0
  • Coverage: 279.0
  • Bit_score: 431
  • Evalue 5.60e-118
Variovorax paradoxus strain MEDvA23 contig_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22970.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.0
  • Coverage: 319.0
  • Bit_score: 472
  • Evalue 5.30e-130
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 64.9
  • Coverage: 322.0
  • Bit_score: 420
  • Evalue 7.00e-115

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 990
ATGCCGATCAACGAGTTGCGTTCCATTGCCACTTTTGTGAAGACGGCCGAACTCGGCAGCTTGCGGCAAGCCGCAGCCGCACAAGGCATGACACCGCAGGCGGCAAGCCAGGCGCTGGCCCAACTCGAGAAGCATCTGGGAGTGCGGTTGTTTCATCGCACGACCCGCCGAATGTCGCTGACGGATGAAGGCCGGCATTTCCTCGAGGCTGCGCAAGCGCCTTTGCTCGGTATGCAACGCGCGCTGGAAACGACGCGGCAAGCCAAGGACGGCATCGCGGGTCCGCTGCGTGTGGTGGGTCCCCTGTCGGTCTTCACGCCGGTGCTGTGGCCGCTGCTGGACACCTTCTGTCGCCGATACCCCGAAGTCCAGCCCGATGTGCAACTGGACGACCGCATCGGCAACTGGGTTGAAGACAGGGTCGACGTGGGATTTCGCATCGGCCCGTCGCCGATGGACGGCGTGATCGGGCGGCGGCTTTTCACCTTGCAACTCATCGTATGCGCGTCGCCTGCCTATCTTTCGCAGCACGGTGTGCCGGAGAGCCTCGGTGCCCTGTCCACTCACCGCTGCAGCGCCTTTCGCAACCCCGGAACAGGCCGCGTACTGCCGTGGTACGTCAAGAACGGAAACGAGCTGGTCGAGCATCAGGTCGTGCCCGCCCTTACCGTCAACGATGAGGCGCTGGAAACCGAAGCGGTGCTGGCGGGCCATGTGATCGGTTTGCTCACCAGCGTGGCGGCCGCGCCGCACATCCGTGCAGGGCGACTGGTTCCGCTGCTTCTCGAGCATGTCGCGGACAAGTCGGGGGTGTTCGTCTACTACGGAAACCGCACATCGTTGCCGGCCCGCGTCCGTGCGTTCATCGACGTCGCGATCGAACTGCTGGCCGACAACCCGGCTTACGTGCTCGGCGCCGATGAACTTGCCCACGCGCAAACGGCTTGGCGAAGTTCCCAGACCTTGGGCTTTGATTCGACAGGTTCCTGA
PROTEIN sequence
Length: 330
MPINELRSIATFVKTAELGSLRQAAAAQGMTPQAASQALAQLEKHLGVRLFHRTTRRMSLTDEGRHFLEAAQAPLLGMQRALETTRQAKDGIAGPLRVVGPLSVFTPVLWPLLDTFCRRYPEVQPDVQLDDRIGNWVEDRVDVGFRIGPSPMDGVIGRRLFTLQLIVCASPAYLSQHGVPESLGALSTHRCSAFRNPGTGRVLPWYVKNGNELVEHQVVPALTVNDEALETEAVLAGHVIGLLTSVAAAPHIRAGRLVPLLLEHVADKSGVFVYYGNRTSLPARVRAFIDVAIELLADNPAYVLGADELAHAQTAWRSSQTLGFDSTGS*