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SCNpilot_cont_300_bf_scaffold_984_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_984_curated_1
Pseudomonas batumici, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(110..922)
DNA (813bp) protein (271aa)
Short chain dehydrogenase(EC:1.-) {ECO:0000313|EMBL:KIH83774.1}; TaxID=226910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas batumici.;"
short chain (glucose/xylose) dehydrogenase (EC:1.1.1.-)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM18 RepID=J2N2J9_9PSED
SCNpilot_cont_300_bf_scaffold_984_curated_2
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1127..1978)
DNA (852bp) protein (284aa)
aldo/keto reductase; K06221 2,5-diketo-D-gluconate reductase A [EC:1.1.1.274]
Aldo/keto reductase, diketogulonate reductase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WVM5_9BURK
Aldo/keto reductase, diketogulonate reductase {ECO:0000313|EMBL:EHR69536.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
SCNpilot_cont_300_bf_scaffold_984_curated_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2035..4230)
DNA (2196bp) protein (732aa)
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase protein; K11177 xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4]
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein n=1 Tax=Acidovorax sp. CF316 RepID=J0UDD6_9BURK
Variovorax paradoxus strain MEDvA23 contig_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22973.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_984_curated_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4234..5184)
DNA (951bp) protein (317aa)
oxidoreductase, molybdopterin-binding subunit; K11178 xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]
Oxidoreductase, molybdopterin-binding subunit n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JN05_AGRRK
Variovorax paradoxus strain MEDvA23 contig_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22972.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_984_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5181..5837)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Duganella zoogloeoides RepID=UPI0003693191
Variovorax paradoxus strain MEDvA23 contig_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22971.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
(2Fe-2S)-binding domain protein; K13483 xanthine dehydrogenase YagT iron-sulfur-binding subunit
SCNpilot_cont_300_bf_scaffold_984_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5975..6964
DNA (990bp) protein (330aa)
Transcriptional regulator (Fragment) n=1 Tax=Acidovorax sp. CF316 RepID=J0UDD2_9BURK
Variovorax paradoxus strain MEDvA23 contig_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22970.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_984_curated_7
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7532..8992)
DNA (1461bp) protein (487aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000371481D
Cupriavidus basilensis strain 4G11 chromosome main, complete sequence {ECO:0000313|EMBL:AJG19842.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_984_curated_8
unknown

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comp(9086..9205)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_984_curated_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9319..10410
DNA (1092bp) protein (364aa)
myristoyl transferase n=1 Tax=Variovorax paradoxus RepID=UPI00037EA4E7
Variovorax paradoxus strain MEDvA23 contig_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37211.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
NMT1/THI5 like domain-containing protein
SCNpilot_cont_300_bf_scaffold_984_curated_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10415..11242
DNA (828bp) protein (276aa)
ABC transporter ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003808F06
Variovorax paradoxus strain MEDvA23 contig_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37194.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_984_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11239..12066
DNA (828bp) protein (276aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00036E5E57
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACS18548.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_984_curated_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12059..13021
DNA (963bp) protein (321aa)
Extracellular solute-binding protein family 3 n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CV98_VARPS
Variovorax paradoxus strain MEDvA23 contig_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37192.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
family 3 extracellular solute-binding protein
SCNpilot_cont_300_bf_scaffold_984_curated_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13216..14151
DNA (936bp) protein (312aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CW26_VARPS
LysR family transcriptional regulator; K13635 LysR family transcriptional regulator, cys regulon transcriptional activator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACS16724.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_984_curated_14
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14479..15441)
DNA (963bp) protein (321aa)
NAD-dependent dehydratase n=1 Tax=Ralstonia sp. AU12-08 RepID=S9TB30_9RALS
NAD-dependent dehydratase {ECO:0000313|EMBL:KHK49581.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
NAD-dependent epimerase/dehydratase
SCNpilot_cont_300_bf_scaffold_984_curated_15
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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15479..15967
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000375C672
MerR family transcriptional regulator {ECO:0000313|EMBL:KJU77753.1}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes.;"
MerR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_984_curated_16
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16033..16716
DNA (684bp) protein (228aa)
dimethyl sulfoxide reductase subunit C n=1 Tax=Pseudomonas pyrrocinia RepID=UPI0003748B29
Uncharacterized protein {ECO:0000313|EMBL:AIO26127.1}; TaxID=983594 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia ATCC 25416.;"
ThiJ/PfpI family protein
SCNpilot_cont_300_bf_scaffold_984_curated_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16928..17437
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9N6_VARPE
hypothetical protein; K09983 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU35084.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_984_curated_18
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17651..18133)
DNA (483bp) protein (161aa)
elongation factor GreAB n=1 Tax=Acidovorax radicis RepID=UPI0002375BDD
transcription elongation factor grea/greb domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_cont_300_bf_scaffold_984_curated_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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18454..18957
DNA (504bp) protein (168aa)
DTW domain containing protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V1X4_VARPE
Variovorax paradoxus strain MEDvA23 contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34672.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
dtw domain containing protein
SCNpilot_cont_300_bf_scaffold_984_curated_20
unknown

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18968..19189
DNA (222bp) protein (74aa)

This feature has no annotations

Displaying 20 items

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