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SCNpilot_cont_300_bf_scaffold_174_curated_13

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 13085..13414

Top 3 Functional Annotations

Value Algorithm Source
Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CJ66_VARPS similarity UNIREF
DB: UNIREF100
  • Identity: 97.2
  • Coverage: 109.0
  • Bit_score: 218
  • Evalue 2.50e-54
sigma 54 modulation protein/30S ribosomal protein S30EA; K05808 putative sigma-54 modulation protein similarity KEGG
DB: KEGG
  • Identity: 97.2
  • Coverage: 109.0
  • Bit_score: 218
  • Evalue 7.90e-55
Sigma 54 modulation protein/ribosomal protein S30EA {ECO:0000313|EMBL:ACS17066.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.2
  • Coverage: 109.0
  • Bit_score: 218
  • Evalue 3.50e-54

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 330
ATGAATTTGACGATCAGCGGTCATCACCTCGACGTCACACCTGCCTTGCGCACCTACGTCACGAGCAAGCTGGACCGGATCACGCGACATTTCGACCAGGTAGTCGATGTCAAGGTGATCCTCACGGTGGAAAAGCAGAAGGAAAAGGAACGCCGCCAAAGGGCGGAATGCAACATCCACGTCAAAGGCAATGACATGTTCGCGGAGTCGAGCCACGCTGATCTCTACGCTGCGGTCGATGAACTGGTCGACAAGCTCGACCGCCAGGTGGTTCGCCACAAGGACCGGCTGCAGGACCATCATCACGCGACACCCAAGCGCCTGATGTGA
PROTEIN sequence
Length: 110
MNLTISGHHLDVTPALRTYVTSKLDRITRHFDQVVDVKVILTVEKQKEKERRQRAECNIHVKGNDMFAESSHADLYAAVDELVDKLDRQVVRHKDRLQDHHHATPKRLM*