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SCNpilot_cont_300_bf_scaffold_174_curated_122

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 133874..135583

Top 3 Functional Annotations

Value Algorithm Source
peptide ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI0003611179 similarity UNIREF
DB: UNIREF100
  • Identity: 90.7
  • Coverage: 571.0
  • Bit_score: 1030
  • Evalue 0.0
Variovorax paradoxus strain MEDvA23 contig_98, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ20302.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.8
  • Coverage: 571.0
  • Bit_score: 975
  • Evalue 3.30e-281
polypeptide-transport-associated domain-containing protein shlb-type similarity KEGG
DB: KEGG
  • Identity: 82.3
  • Coverage: 583.0
  • Bit_score: 967
  • Evalue 2.00e-279

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1710
ATGCAAGCCCGCCACTCCCTGACCCCTACGGCCTTCGCAGCCGCGACGCTGGTGAGCGCGGCGCTGCTGCTGGCAACCCAACGCACGCACGCAGCAGAGGCCGTACCCGACACGCTGCTCTCCACACAAGACCCCTGCGGCACTTGCGATCGGCCCCTGGCACAAGCACCAGGCACGGTCGCACCGCAAAGCCTGCCCGCACCGCCGAAACCCGCCGGCGCATCGTTCAGGCTCAACGACCTGCGCCTCAACGGCGTCAAGGCGCTGAGCAACGAAGAGCTGCAAACCATCACCTCGCCCTACATCGGCCGTGAGGTCACGCTTTCCGACCTGGAAGAACTCGCCAAGGCCATCACCGCCCGCTACAAGGAACGCGGCTACTTCCTCGCGCAAGCCGTGGTGCCCGTGCAGACCGTGCGCGACGGCATCGTCGAGATCAGCGTCATCGAAGGGCGCCTGGGCAAGGTCGACGTCGTCGTCGCGCCCGATGCGCCCATCGCCGAAGCACGCGTGCGCGGCTTCCTTGCGCCGCTGCAGCCTGGCGAAGCCGTCAGCGCGCCGGCCTACGAACGCGCGATGCTGCTGCTGTCCGACCAGCCCGGCATCAAGGTCTCGTCGGGCCTGCAGGAAGGCACGCAGGCCGGTACCACCGACCTGTCGGTCGAGGTGGCGCCCGCGCCGCGCTGGGCCTTCACGGCCGAGGGCGACAACTACGGCACCAAGGAATCGGGCCGCTACCGCGTGGGCGGCACCGCGCGCTGGCTCAGCCCCTTCGGCATCGGCGACAACCTGGACATGCGCCTGATGGTGTCCGACAGCAACGCGCTGCAGTTCGGCCGCATCGCCTACGAGGCGCCCATCGGCACCAGCGGGCTGCGCGCGGGCGTGGGTCTGTCGCGCGTGAGCTACGAGCTGGGCGGGCAGTTCGTCGACCTCGACGCGCGCGGCCGCGCCGACGTGCTCGACTTCTCGCTGAGCTACCCGGTGATCCGCCAGCGCCAGCAGAACCTGTTCCTGCGCCTGGGCGTGGACGTGAAGGACCTGACCGACGAGCTGCGCGCGGCCGACTTCACGTCGAAGAAGCGCGTCAACGGCCTGAGCCTGGGCTGGACCTGGGAGCGCCGCGACGAGCTGCTGGGCGGCGGCTACTGGGCCAGCTCGGGCACGCTGTACCACGGCAACCTGTCGATCCGCGATCCGGAGAGCCGTGACTTCGACCGCGGCATCACCGGTCACCACACCGAGGGCGGCTTCACCAAGCTGAGCTTCCAGTTCTCGCGCCTGCAGGCCATCGTGCCGCGCCATTCGCTGTACCTGTCGCTGGGCGGCCAGTGGGCCAGCAAGAACCTCGACGCTTCGGAAAAACTCGCGCTCGGCGGCGCGCGCGCCGTGCGTGCCTACCCCTCGGGCGAACTGCTGGTGGACCAGGGCCTGATCGGCACCGTGGAGTGGCGCTGGTCGTTCAACGAGGAACTCACGCCCTTCGTCTTCTACGACGCCGCGCACGGAAAGATCGTGCGCAACCCGACGCCCTACGACGGCATCAACAGCCACAGCCTGCGCGGCTACGGCGTGGGCCTGAGCTGGTCGCGCCCGGGCAATTTCTCGATCAACGCGACGCTGGCCTGGCGCGCCGGCACGCCGCCCGCGCTGACGGACGGCGGCGGGCGCAACCCGCGCCTGTACGTGCAGCTCATCAAGGCGTTCTGA
PROTEIN sequence
Length: 570
MQARHSLTPTAFAAATLVSAALLLATQRTHAAEAVPDTLLSTQDPCGTCDRPLAQAPGTVAPQSLPAPPKPAGASFRLNDLRLNGVKALSNEELQTITSPYIGREVTLSDLEELAKAITARYKERGYFLAQAVVPVQTVRDGIVEISVIEGRLGKVDVVVAPDAPIAEARVRGFLAPLQPGEAVSAPAYERAMLLLSDQPGIKVSSGLQEGTQAGTTDLSVEVAPAPRWAFTAEGDNYGTKESGRYRVGGTARWLSPFGIGDNLDMRLMVSDSNALQFGRIAYEAPIGTSGLRAGVGLSRVSYELGGQFVDLDARGRADVLDFSLSYPVIRQRQQNLFLRLGVDVKDLTDELRAADFTSKKRVNGLSLGWTWERRDELLGGGYWASSGTLYHGNLSIRDPESRDFDRGITGHHTEGGFTKLSFQFSRLQAIVPRHSLYLSLGGQWASKNLDASEKLALGGARAVRAYPSGELLVDQGLIGTVEWRWSFNEELTPFVFYDAAHGKIVRNPTPYDGINSHSLRGYGVGLSWSRPGNFSINATLAWRAGTPPALTDGGGRNPRLYVQLIKAF*