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SCNpilot_cont_300_bf_scaffold_174_curated_146

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 173191..175566

Top 3 Functional Annotations

Value Algorithm Source
type VI secretion protein Vgr n=1 Tax=Variovorax paradoxus RepID=UPI000378B3D0 similarity UNIREF
DB: UNIREF100
  • Identity: 66.1
  • Coverage: 813.0
  • Bit_score: 1042
  • Evalue 0.0
type VI secretion system vgr family protein similarity KEGG
DB: KEGG
  • Identity: 72.4
  • Coverage: 692.0
  • Bit_score: 1019
  • Evalue 8.10e-295
Type VI secretion system Vgr family protein {ECO:0000313|EMBL:ADU34789.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.4
  • Coverage: 692.0
  • Bit_score: 1019
  • Evalue 3.60e-294

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2376
ATGGCCGACAACGAGTTCCGCATCGACAGCGATTCCCCCGCCAAGGACGACCTGATGTTCTGGCGCATCGTGGGGCACGAGGCGCTGGCGCGCCCGTCGGCTTACGAGCTCACGGTGCTGTCGAAGAACAAGGCCATCGACGCCAAGGACATCCTCGGGCGGGCATTCGACGTGGTCATCGAGTTCAAGGACGCCGATGGCGGCACGCACGAGCGCCACTGCCAGGGCCATGCGGTGCGCTTCGTGCGCGCGGGCCACGTCGGGCGGCACTACGAATACCGCATCACGCTGCGCTCGTGGTTCTGGCTGCTCACCAAGCGCACCAACTCGCGCATCCTGCAGGAAAAGAAAGTTCTCGAAGTGCTCGACGCCGTGTTCGAGGACAGCCCCATCAAGCGCTTCAAGAAGACCAGGGCCGACAACGTCATCGGCACCCACAACCCCCGCCGGTACTGCGTGCAGCACCAGGAAAGCGACTACGGATTCCTCTCGCGCCTGCTCGAGGACGAAGGCATCTACTACTGGTTCGACGCGCACGGCGCGCCCGGCACCATGCACCTGTCGGACGCCAGCGACATCGCCCACGAGAAGCTGCCGGCCAACGACACGCTGCACCACATGGCCACCGATGCCTCCGAGGCGCGCTTCAACGAAGTGTCGCGCTGGGTCAGCGGCCGGCAGTTCGGCACCGGCAAGCATGCGTCGCGCGACAGCGATTTCAAGGCCATCAAGAAAAAGCTCGGCGCCGACGCCGACGCATCCGGCGAGCACGAGCTGGCCTCGCTCGAAATGTTCGAGTTCCCCGGCGGCTACTTCACCGGCGACGAGGGAGAAAGCCGCGCCAAGCTGCGCGGCGACGAACTCCGCGCGCGCCGCGACCGCCACTGGGCGCTGACGCCGTGGCCCGATGTCGCCGCGGGGCGGGGCTTCAAGTTCGAGGGCGATCCCGACGGCACACGCAACGGCGAGTACATCATCGCGGCCTGCACCTTCGTCGCGAGCCATCGCGGCTACGAAGGCGTGAGCGCAAGCGCGGCGTCCGCGGCGCGGCCGGTGCAGGCGGCGCTGGCCGAGGTGCTGCGCGACGACGCCGTCAACGCCGACACGCTGCAGGTGCTCGAAGACCTGATCGCGGCCACGCCCGCGCTGGCGGCCGGGCAGCCCGGCACCAGTGCCTTCCTGCTCACCGTGATGCCGGCCGACCGGCCGTTCCGCGCGCCGCGCCTCACGCCGCGCGTCACCATGCCGGGGCCGCAGACCGCCATCGTGGTCGGCCCCAAGGGCGACGAACTGCACGTGGACGACCACGGCCGCGTGAAGGTGCACTTCCACTGGGACCGCTACGACGAGAGCGACGAGAAGTCGACCTGCTGGGTGCGCGTGTCGCAGCCGTGGGCGGGCAAGGGCTGGGGCGGCTACTTCGCGCCGCGCATCGGGCAGGAGGTGATCGTCGACTTCCTGAACGGCGACCCCGACCGGCCGATCATCATGGGGCGGGTCTACAACGACGACCAGCCGATTCCCTTCAAGTCGCACACCCAGAGCGGCTTTCGCACGCGTTCGACGCCGAAGGGGAACGCCGCCAATTTCAACGAGTTCAGGTTCGAGGACGACAAGGGCAAGGAGCAGGTCTACCTGCATGCCGAGCGCAACCTGGACGTCGAGGTGGAGGCCGACGAGACGCGCAACGTGGGCCACGACCGCACCAAGACCGTGGGCCACGACGAGAAGGTGAAGATCAAGAACGATCGCACGGAAGAGGTGACCGGCAACGAGACGATCACCATCCACGGCAAGCGCGAGCTGACCGTGGACAAGGACCAGTACGTGACCATCAAGACCAACCACTCCGAGGAAGTGACGGGGTGGAAATCGACATGGGTGACAGGCAACCACCGGCTCTCGACGAGCGCGAACCACGACCAGACGGTCCAGGGCAACGAGACCATCGACGTCAGCGGCACGCGCTCCGACACCGTGGTGGGCGCGGTCACCCAGAAGGTGGGGCCGTTCACGCAGACGGTGACCGGAGCGATGACGGTGACGGCCGCCGGGCCGATCACATTCAATGCGCCGGCCGGCTTCACGGTGGTCGCGCCCGGCGGGACGAAGATCATCGACATGTCGCTGGAGCAGTTCGGCGGCAAGATCTTCGAGGGCTACGGCATCAAGATCACGGCCAACCTGGCGAACATGGCGCTGGACAACGCCAAGTTCGCGCTCAACGGCGTGAACCTCGCGTCCACCGGCATGAAGCTGGACAAGGCCATGTTCAATCTTGCAGACAAGGACTGCGAGATCAAGAAGTCCGAAGCGCTCATCGGCGCGTTCCCGGGGGTCGCGCTGACCCTGGCGGCAGTGAAGATCTTTCTCTAG
PROTEIN sequence
Length: 792
MADNEFRIDSDSPAKDDLMFWRIVGHEALARPSAYELTVLSKNKAIDAKDILGRAFDVVIEFKDADGGTHERHCQGHAVRFVRAGHVGRHYEYRITLRSWFWLLTKRTNSRILQEKKVLEVLDAVFEDSPIKRFKKTRADNVIGTHNPRRYCVQHQESDYGFLSRLLEDEGIYYWFDAHGAPGTMHLSDASDIAHEKLPANDTLHHMATDASEARFNEVSRWVSGRQFGTGKHASRDSDFKAIKKKLGADADASGEHELASLEMFEFPGGYFTGDEGESRAKLRGDELRARRDRHWALTPWPDVAAGRGFKFEGDPDGTRNGEYIIAACTFVASHRGYEGVSASAASAARPVQAALAEVLRDDAVNADTLQVLEDLIAATPALAAGQPGTSAFLLTVMPADRPFRAPRLTPRVTMPGPQTAIVVGPKGDELHVDDHGRVKVHFHWDRYDESDEKSTCWVRVSQPWAGKGWGGYFAPRIGQEVIVDFLNGDPDRPIIMGRVYNDDQPIPFKSHTQSGFRTRSTPKGNAANFNEFRFEDDKGKEQVYLHAERNLDVEVEADETRNVGHDRTKTVGHDEKVKIKNDRTEEVTGNETITIHGKRELTVDKDQYVTIKTNHSEEVTGWKSTWVTGNHRLSTSANHDQTVQGNETIDVSGTRSDTVVGAVTQKVGPFTQTVTGAMTVTAAGPITFNAPAGFTVVAPGGTKIIDMSLEQFGGKIFEGYGIKITANLANMALDNAKFALNGVNLASTGMKLDKAMFNLADKDCEIKKSEALIGAFPGVALTLAAVKIFL*