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SCNpilot_cont_300_bf_scaffold_174_curated_150

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 179929..180324

Top 3 Functional Annotations

Value Algorithm Source
type VI secretion protein n=1 Tax=Variovorax paradoxus RepID=UPI00035DE33F similarity UNIREF
DB: UNIREF100
  • Identity: 83.8
  • Coverage: 130.0
  • Bit_score: 226
  • Evalue 1.40e-56
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 82.3
  • Coverage: 130.0
  • Bit_score: 226
  • Evalue 5.90e-57
Uncharacterized protein {ECO:0000313|EMBL:ACS17198.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.3
  • Coverage: 130.0
  • Bit_score: 226
  • Evalue 2.60e-56

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 396
ATGTTCGCCAACTGCCAGTTGATGGGGACCGACATGGCTTTCCCCGACGTCTGCCTGACGCCCAGCCCCGCGGGACCGGTGCCCATTCCCTATCCGAACATCGCGATGGGGCCGATGGCGATACCGAATGTGCCGACCATCCTCTTCATGGGCGCGCCCGCGCACAACATGGGCACCACGATCCCCATGAGCAACGGCGACAACCCGGGCGTCGCCACCGGCGTGGCGTCGGGCATGGTGATGGGGCCGTGCCGCCACCTGACGGGCGCCTTCACGGTGCTGCTCAAGGGGATGCCCGCCACCCGCCTGACCAGCATGTCGCTGCAGAACTCCACCAACGCGCCGGGTTGCCGCATCGTGCCCAGCCAGACCAAGGTGCTGCTGCTGGCCGGCTGA
PROTEIN sequence
Length: 132
MFANCQLMGTDMAFPDVCLTPSPAGPVPIPYPNIAMGPMAIPNVPTILFMGAPAHNMGTTIPMSNGDNPGVATGVASGMVMGPCRHLTGAFTVLLKGMPATRLTSMSLQNSTNAPGCRIVPSQTKVLLLAG*