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SCNpilot_cont_300_bf_scaffold_174_curated_151

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 180340..182718

Top 3 Functional Annotations

Value Algorithm Source
Type VI secretion system Vgr family protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5I8_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 84.5
  • Coverage: 792.0
  • Bit_score: 1369
  • Evalue 0.0
type VI secretion system vgr family protein similarity KEGG
DB: KEGG
  • Identity: 84.5
  • Coverage: 792.0
  • Bit_score: 1369
  • Evalue 0.0
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31235.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.5
  • Coverage: 792.0
  • Bit_score: 1369
  • Evalue 0.0

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2379
ATGGCCGACCACGAATTTCGCATCGACAGCGACTCGCCCGTCAACGGCGAGCTGATGTTCTGGCGCATCGCGGGCCATGAGGCGCTGGCACGCGCGTCGAGTTATGAGCTCACGGTGCTGTCGAAGAGCCGCACGCTCGACGCCAGGGACATCCTGGGGCGCGCCTTCGACGTGAGCATCGAGTTCGAGGATGCCGACGGCGCCAGGCACGTGCGCCATTGCCAGGGCCATGCGGTGCGCTTCATGCGCGCGGGGCATGTGGGCCGCTACTTCGAATACCGCATCGCGCTGCGCTCGTGGTTCTGGCTGCTCACCAAGCGCATCAACTCGCGCATCCTGCAGGACAAGAAGGTGCTGGAGGTGCTGGACGCGGTGTTCGAGGACAGCCCCATCAAGCGCTTCAAGAAGACCAGGGCCGACAACGTCATCGGCACGCACGAGCCGCGCCGCTACTGCGTGCAGCACCAGGAAAGCGACTACCAGTTCCTTTCGCGGCTGTTGGAAGACGAAGGCATCTACTACTGGTTCGACGCGCACGACGCGCCCGGCACCATGCACCTGTCGGACGCCAGCGACCTCGCGCACGACAAGCTGCCCGCAGCCTCCACGCTGAACTTCATGCCCGCCGGCGCCACCGAGCCGCGCGACAACGAGATCTCGCGCTGGATCAGCGAGCGGCAGTTCGACACCGGCAAGTACGCCTCGCGCGACAGCAACTTCAAGTCCATCAAGAAGAAGCTCGAGGCCACCGGCGGCGAGCCCGACAAGTGCGAGCTGTCCGAGTTCGAAGCCTTCGAATTCGCAGGCGGCTACTTCTCGGGCGGCGACGCCGACGACAAGGGAAAGCTGCGCGGCGAGGAGATCGGCGCGCGCCGCCAGCGCCACTTCGCGCTCACGCGCTGGCCCGACGTCGCGGCCGGGCGCAGCTTCACCTTCAAGGGCGACCCCGATGCGGCGCGCGACGGCGACTACGTGATCGCGGCCTGCACCTTCGTGGCCAGCCATTCCGGCTACGAGGGCGTGCCGGAGGTCGGCGACCCGGTCCCGCTGGACGTGCTGCTGCGCGAGGCGCTCGAAGACGACGCCGTGTGCGCCGACACGCTGCCCGTGCTGCGCGAGCTGGTGGCGCAGACCCCCGCGCTGCGCGCCGGGCGCAACGGCGACAGCGCCTTCCTGCTCACCGTGATGCCGATCGACGTGCCCTTCCGTCCGCCGCGCCTCACGCCCCGCGTGCGCATGCCCGGCCCGCAGTCGGCCATCGTGGTGGGGCCGGACGGCGAGGAGATACACGCCGACGACTTCGGCCGCGTGAAGGTGCACTTCCACTGGGACCGCTACGACAAGAGCAACGAGAAGTCGACCTGCTGGGTGCGCGTGTCGCAGCCGTGGGCGGGCAAGGGCTGGGGCGGCTACTTCATTCCGCGCATCGGGCAGGAGGTGATCGTCGACTTCCTGAACGGCGACCCCGACCGTCCGCTGGTCATCGGCCGCGTCTACAACGACGACCAGCCCATTCCTTTCGGAAGCCACACGCAGAGCGGTTTTCGCACGCGCTCCACGCCCAAGGGCAGCGCGGCCAACTGCAACGAGTTCCGCTTCGAGGACAAGAAGGGCTCGGAGCAGGTGTACCTGCATGCCGAGAAGAACCAGGACATCGAGGTCGAGAACGACGAGACCCACTGGGTGGGCCACGACCGCAAGAAGACCGTCGACCACGACGAGACGGTGCACGTGAAGCACGACCGCACCGAGACCGTCGGCAACAACGAGAAGATCACCATCGGCGTGAACCGCACGGAATCGGTGGGCAACAACGAGACCATCTCGATCGGCGTGAACCGCACCGAGACCGTGGGAAGCAACGAGACCATCACCATCGGCAGCAACCGCACGATCACCGTGGGCGCGAGCGAGACGGCCACGGTGGCGCTGCAGCGCACCCATACGGTGGGGGTGAACGAGACCATCACCGTGGGCGCGGCGCAGGAGATCACCGTGGGGGCCGTGCAGGCCGTGACCGTGGGCGCGAGCCAGACCATCAGCGTGGGCGCCAACCAGTCGAGCAGCATCGGCGCCAACCGGTCGGTGGACGTGGGGGCGAACCTCACGACGAACGTGGGCAGCGACGAGGCGCGCAGCGTGGGCAAGGGCCGCTCCACCAGCGTGGGCAAGGACGATTCGCTGAGCGTGGGCAAGAACCTCGTCATCAGCGCGGGCGACTCCATCTCCATCACCACAGGCAGCGCGAGCATCACGATGAAGAAGGACGGGACCATCGTCATCAAGGGCAAGGACATCACGATCGACGCCTCCGGAAAGATCAATGCGAAGGCAAGCAGCGACATCGTGATGAAGGGCTCGAAGATTCTGCAGAACTGA
PROTEIN sequence
Length: 793
MADHEFRIDSDSPVNGELMFWRIAGHEALARASSYELTVLSKSRTLDARDILGRAFDVSIEFEDADGARHVRHCQGHAVRFMRAGHVGRYFEYRIALRSWFWLLTKRINSRILQDKKVLEVLDAVFEDSPIKRFKKTRADNVIGTHEPRRYCVQHQESDYQFLSRLLEDEGIYYWFDAHDAPGTMHLSDASDLAHDKLPAASTLNFMPAGATEPRDNEISRWISERQFDTGKYASRDSNFKSIKKKLEATGGEPDKCELSEFEAFEFAGGYFSGGDADDKGKLRGEEIGARRQRHFALTRWPDVAAGRSFTFKGDPDAARDGDYVIAACTFVASHSGYEGVPEVGDPVPLDVLLREALEDDAVCADTLPVLRELVAQTPALRAGRNGDSAFLLTVMPIDVPFRPPRLTPRVRMPGPQSAIVVGPDGEEIHADDFGRVKVHFHWDRYDKSNEKSTCWVRVSQPWAGKGWGGYFIPRIGQEVIVDFLNGDPDRPLVIGRVYNDDQPIPFGSHTQSGFRTRSTPKGSAANCNEFRFEDKKGSEQVYLHAEKNQDIEVENDETHWVGHDRKKTVDHDETVHVKHDRTETVGNNEKITIGVNRTESVGNNETISIGVNRTETVGSNETITIGSNRTITVGASETATVALQRTHTVGVNETITVGAAQEITVGAVQAVTVGASQTISVGANQSSSIGANRSVDVGANLTTNVGSDEARSVGKGRSTSVGKDDSLSVGKNLVISAGDSISITTGSASITMKKDGTIVIKGKDITIDASGKINAKASSDIVMKGSKILQN*