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SCNpilot_cont_300_bf_scaffold_174_curated

Search features with annotation key words

Displaying items 151-180 of 190 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_174_curated_151
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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180340..182718
DNA (2379bp) protein (793aa)
Type VI secretion system Vgr family protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5I8_VARPE
type VI secretion system vgr family protein
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31235.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_174_curated_152
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

182740..183222
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X5Y4_VARPD
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31234.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_174_curated_153
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

183248..184360
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5BS17_9GAMM
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31233.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_174_curated_154
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

184357..185394
DNA (1038bp) protein (346aa)
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31232.1}; EC=2.3.1.41 {ECO:0000313|EMBL:KIQ31232.1};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein; K00647 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
Uncharacterized protein n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4T2Y1_META2
SCNpilot_cont_300_bf_scaffold_174_curated_155
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

185398..186528
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003742B2A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU47747.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_174_curated_156
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

186545..187429
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X579_VARPD
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31240.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_174_curated_157
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

187442..188734
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X5Y7_VARPD
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31231.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_174_curated_158
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

188981..190660
DNA (1680bp) protein (560aa)
Type VI secretion system FHA domain protein n=1 Tax=Variovorax sp. CF313 RepID=J2TGF1_9BURK
Type VI secretion system FHA domain protein {ECO:0000313|EMBL:EJL77497.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
fha domain containing protein; K07169 FHA domain-containing protein
SCNpilot_cont_300_bf_scaffold_174_curated_159
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

190713..191516
DNA (804bp) protein (268aa)
Serine/threonine protein phosphatase n=1 Tax=Variovorax sp. CF313 RepID=J2KWT7_9BURK
Serine/threonine protein phosphatase {ECO:0000313|EMBL:EJL77498.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative protein phosphatase
SCNpilot_cont_300_bf_scaffold_174_curated_160
unknown

Not on your lists

comp(191548..192417)
DNA (870bp) protein (290aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_174_curated_161
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(192512..192985)
DNA (474bp) protein (158aa)
type VI secretion protein n=1 Tax=Variovorax paradoxus RepID=UPI000380CF96
Uncharacterized protein ImpD {ECO:0000313|EMBL:CDS48491.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
hypothetical protein; K11903 type VI secretion system secreted protein Hcp
SCNpilot_cont_300_bf_scaffold_174_curated_162
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(193136..194629)
DNA (1494bp) protein (498aa)
Type VI secretion protein, EvpB/VC_A0108 family n=1 Tax=Variovorax paradoxus B4 RepID=T1X6G9_VARPD
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31225.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
type VI secretion protein, EvpB/VC_A0108 family
SCNpilot_cont_300_bf_scaffold_174_curated_163
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(194671..195186)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037FF003
Type VI secretion protein, VC_A0107 family {ECO:0000313|EMBL:EJL77502.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type VI secretion protein; K11901 type VI secretion system protein ImpB
SCNpilot_cont_300_bf_scaffold_174_curated_164
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(195245..196285)
DNA (1041bp) protein (347aa)
type VI secretion protein ImpA n=1 Tax=Variovorax paradoxus RepID=UPI000372184E
type VI secretion-associated protein, ImpA family
Type VI secretion-associated protein, ImpA family {ECO:0000313|EMBL:AGU47757.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_174_curated_165
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

196357..196869
DNA (513bp) protein (171aa)
type VI secretion protein n=1 Tax=Variovorax paradoxus RepID=UPI00036690F3
Type VI secretion lipoprotein, VC_A0113 family {ECO:0000313|EMBL:EJL77504.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type VI secretion lipoprotein; K11906 type VI secretion system protein VasD
SCNpilot_cont_300_bf_scaffold_174_curated_166
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(196888..198000)
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003708082
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31221.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_174_curated_167
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(197997..199340)
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KB83_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL77505.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type IV / vi secretion system, dotu
SCNpilot_cont_300_bf_scaffold_174_curated_168
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

199581..200258
DNA (678bp) protein (226aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Variovorax sp. CF313 RepID=J3CSU2_9BURK
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EJL77506.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
two component LuxR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_174_curated_169
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(200270..201577)
DNA (1308bp) protein (436aa)
Monooxygenase FAD-binding protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6F0_VARPE
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31218.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
FAD-binding monooxygenase protein; K07222 putative flavoprotein involved in K+ transport
SCNpilot_cont_300_bf_scaffold_174_curated_170
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(201615..201899)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6F1_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU34814.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_174_curated_171
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(201890..202897)
DNA (1008bp) protein (336aa)
AIR synthase related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6F2_VARPE
air synthase-like protein; K07123
AIR synthase related protein {ECO:0000313|EMBL:ADU34815.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_174_curated_172
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(202894..203454)
DNA (561bp) protein (187aa)
GCN5-related N-acetyltransferase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6F3_VARPE
GCN5-like N-acetyltransferaser
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADU34816.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_174_curated_173
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(203457..204539)
DNA (1083bp) protein (361aa)
Radical SAM domain protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CKC5_VARPS
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31239.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
radical SAM protein
SCNpilot_cont_300_bf_scaffold_174_curated_174
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(204502..205545)
DNA (1044bp) protein (348aa)
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; K01502 aliphatic nitrilase [EC:3.5.5.7]
aliphatic nitrilase n=1 Tax=Variovorax paradoxus RepID=UPI00036D6126
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31213.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_174_curated_175
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(205560..206042)
DNA (483bp) protein (161aa)
MSMEG_0572 family protein n=1 Tax=Variovorax sp. CF313 RepID=J2K5M7_9BURK
MSMEG_0572 family protein {ECO:0000313|EMBL:EJL75500.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_174_curated_176
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

206397..207788
DNA (1392bp) protein (464aa)
GntR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000363A327
transcriptional regulator, GntR family
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AGU47770.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_174_curated_177
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(207816..208370)
DNA (555bp) protein (185aa)
DNA-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000370D906
Rrf2 family protein, putative transcriptional regulator {ECO:0000313|EMBL:EJL77507.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
iscR; transcriptional regulator IscR; K13643 Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
SCNpilot_cont_300_bf_scaffold_174_curated_178
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(208505..209389)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036101C6
Variovorax paradoxus strain MEDvA23 contig_97, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ20579.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein; K08994 putative membrane protein
SCNpilot_cont_300_bf_scaffold_174_curated_179
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

209521..209946
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Burkholderia sp. (strain 383) RepID=Q392H7_BURS3
Uncharacterized protein {ECO:0000313|EMBL:KEA58528.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_174_curated_180
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

210256..210957
DNA (702bp) protein (234aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phosphoglycolate phosphatase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
2-phosphoglycolate phosphatase n=1 Tax=Variovorax sp. CF313 RepID=J3CSB7_9BURK
Displaying items 151-180 of 190 in total

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