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SCNpilot_cont_300_bf_scaffold_174_curated

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Displaying items 91-120 of 190 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_174_curated_91
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(99642..100598)
DNA (957bp) protein (319aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
thiL; thiamine-monophosphate kinase ThiL (EC:2.7.4.16)
Thiamine-monophosphate kinase n=1 Tax=Variovorax sp. CF313 RepID=J2KEP7_9BURK
SCNpilot_cont_300_bf_scaffold_174_curated_92
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(100580..101173)
DNA (594bp) protein (198aa)
Ribose 1,5-bisphosphate phosphokinase PhnN {ECO:0000256|HAMAP-Rule:MF_00836}; EC=2.7.4.23 {ECO:0000256|HAMAP-Rule:MF_00836};; Ribose 1,5-bisphosphokinase {ECO:0000256|HAMAP-Rule:MF_00836}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Ribose 1,5-bisphosphate phosphokinase PhnN n=1 Tax=Variovorax paradoxus B4 RepID=T1XNL0_VARPD
phnN; 1,5-bisphosphokinase (PRPP-forming)/phosphonate metabolism protein PhnN
SCNpilot_cont_300_bf_scaffold_174_curated_93
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(101170..101904)
DNA (735bp) protein (245aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D163_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS22664.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_174_curated_94
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(101897..102652)
DNA (756bp) protein (252aa)
Phosphonate metabolism transcriptional regulator PhnF, GntR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XLF5_VARPD
phnF; phosphonate metabolism transcriptional regulator PhnF, GntR family
Phosphonate metabolism transcriptional regulator PhnF, GntR family {ECO:0000313|EMBL:AGU53707.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_174_curated_95
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

102730..103233
DNA (504bp) protein (168aa)
Phosphonate C-P lyase system protein PhnG n=1 Tax=Variovorax paradoxus B4 RepID=T1XM83_VARPD
phnG; phosphonate C-P lyase system protein PhnG
Phosphonate C-P lyase system protein PhnG {ECO:0000313|EMBL:AGU53708.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_174_curated_96
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

103230..103859
DNA (630bp) protein (210aa)
Phosphonate C-P lyase system protein PhnH n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D160_VARPS
phosphonate C-P lyase system protein PhnH; K06165 PhnH protein
Phosphonate C-P lyase system protein PhnH {ECO:0000313|EMBL:ACS22661.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_174_curated_97
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

103861..104958
DNA (1098bp) protein (366aa)
Phosphonate metabolism n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D159_VARPS
phosphonate metabolism; K06164 PhnI protein
Phosphonate metabolism {ECO:0000313|EMBL:ACS22660.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_174_curated_98
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

104955..105827
DNA (873bp) protein (291aa)
Phosphonate metabolism PhnJ n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D158_VARPS
phosphonate metabolism PhnJ; K06163 PhnJ protein
Phosphonate metabolism PhnJ {ECO:0000313|EMBL:ACS22659.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_174_curated_99
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

105824..106612
DNA (789bp) protein (263aa)
Phosphonate C-P lyase system protein PhnK n=1 Tax=Variovorax paradoxus B4 RepID=T1XLG0_VARPD
phnK; phosphonate C-P lyase system protein PhnK
Phosphonate C-P lyase system protein PhnK {ECO:0000313|EMBL:AGU53712.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_174_curated_100
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

106609..107322
DNA (714bp) protein (238aa)
Phosphonate C-P lyase system protein PhnL n=1 Tax=Variovorax paradoxus B4 RepID=T1XM88_VARPD
phnL; phosphonate C-P lyase system protein PhnL
Phosphonate C-P lyase system protein PhnL {ECO:0000313|EMBL:AGU53713.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_174_curated_101
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

107319..108473
DNA (1155bp) protein (385aa)
Phosphonate metabolism protein PhnM n=1 Tax=Variovorax paradoxus B4 RepID=T1XN59_VARPD
phnM; phosphonate metabolism protein PhnM
Phosphonate metabolism protein PhnM {ECO:0000313|EMBL:AGU53714.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_174_curated_102
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

108579..109436
DNA (858bp) protein (286aa)
phosphonate ABC transporter ATPase; K02041 phosphonate transport system ATP-binding protein [EC:3.6.3.28]
Phosphonates import ATP-binding protein PhnC {ECO:0000256|HAMAP-Rule:MF_01713}; EC=3.6.3.28 {ECO:0000256|HAMAP-Rule:MF_01713};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
Phosphonate ABC transporter, ATPase subunit n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D154_VARPS
SCNpilot_cont_300_bf_scaffold_174_curated_103
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

109492..110442
DNA (951bp) protein (317aa)
ABC transporter phosphonates-binding protein PhnD n=1 Tax=Variovorax paradoxus B4 RepID=T1XME9_VARPD
phnD; ABC transporter phosphonates-binding protein PhnD
ABC transporter phosphonates-binding protein PhnD {ECO:0000313|EMBL:AGU53716.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_174_curated_104
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

110474..111277
DNA (804bp) protein (268aa)
Phosphonates ABC transporter permease protein PhnE n=1 Tax=Variovorax paradoxus B4 RepID=T1XLG4_VARPD
phnE; phosphonates ABC transporter permease protein PhnE
Phosphonates ABC transporter permease protein PhnE {ECO:0000313|EMBL:AGU53717.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_174_curated_105
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

111288..111857
DNA (570bp) protein (190aa)
Phosphonate degradation operons associated HDIG domain protein n=1 Tax=Acidovorax sp. CF316 RepID=J1E7Z6_9BURK
Phosphonate degradation operons associated HDIG domain protein {ECO:0000313|EMBL:EJE48439.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_174_curated_106
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(111877..113097)
DNA (1221bp) protein (407aa)
Putative glutamate--cysteine ligase 2 {ECO:0000256|HAMAP-Rule:MF_01609}; EC=6.3.2.2 {ECO:0000256|HAMAP-Rule:MF_01609};; Gamma-glutamylcysteine synthetase 2 {ECO:0000256|HAMAP-Rule:MF_01609}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
glutamate--cysteine ligase gcs2; K06048 carboxylate-amine ligase [EC:6.3.-.-]
gamma-glutamyl:cysteine ligase n=1 Tax=Variovorax paradoxus RepID=UPI00035E44A8
SCNpilot_cont_300_bf_scaffold_174_curated_107
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113094..114365)
DNA (1272bp) protein (424aa)
Kef-type K+ transport system, membrane component n=1 Tax=Variovorax sp. CF313 RepID=J3CUD3_9BURK
Kef-type K+ transport system, membrane component {ECO:0000313|EMBL:EJL78694.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
sodium/hydrogen exchanger
SCNpilot_cont_300_bf_scaffold_174_curated_108
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(114362..116335)
DNA (1974bp) protein (658aa)
Site-specific recombinase Gcr n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5E1_VARPE
Site-specific recombinase Gcr {ECO:0000313|EMBL:ADU34747.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
site-specific recombinase gcr
SCNpilot_cont_300_bf_scaffold_174_curated_109
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(116378..116782)
DNA (405bp) protein (135aa)
Protein ApaG n=1 Tax=Variovorax sp. CF313 RepID=J2KEQ1_9BURK
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
apag domain-containing protein; K06195 ApaG protein
SCNpilot_cont_300_bf_scaffold_174_curated_110
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

116834..117529
DNA (696bp) protein (232aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Ribulose-phosphate 3-epimerase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5E3_VARPE
SCNpilot_cont_300_bf_scaffold_174_curated_111
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(117519..117773)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2TJI0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL78697.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_174_curated_112
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

117934..118938
DNA (1005bp) protein (335aa)
Putative deacylase n=1 Tax=Variovorax sp. CF313 RepID=J2L0B1_9BURK
Putative deacylase {ECO:0000313|EMBL:EJL78698.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
succinylglutamate desuccinylase/aspartoacylase
SCNpilot_cont_300_bf_scaffold_174_curated_113
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

119014..119985
DNA (972bp) protein (324aa)
Probable DNA repair protein PMI12_01114 n=1 Tax=Variovorax sp. CF313 RepID=J3CUD6_9BURK
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ku protein; K10979 DNA end-binding protein Ku
SCNpilot_cont_300_bf_scaffold_174_curated_114
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

120001..122538
DNA (2538bp) protein (846aa)
DNA ligase d; K01971 DNA ligase (ATP) [EC:6.5.1.1]
DNA ligase D n=1 Tax=Variovorax sp. CF313 RepID=J2KEQ7_9BURK
DNA ligase D {ECO:0000313|EMBL:EJL78700.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_174_curated_115
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122671..123492)
DNA (822bp) protein (274aa)
Transglutaminase-like enzyme, predicted cysteine protease n=1 Tax=Variovorax sp. CF313 RepID=J3CUW1_9BURK
Transglutaminase-like enzyme, predicted cysteine protease {ECO:0000313|EMBL:EJL78701.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transglutaminase
SCNpilot_cont_300_bf_scaffold_174_curated_116
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

123778..123927
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5E9_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU34755.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_174_curated_117
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

123939..126158
DNA (2220bp) protein (740aa)
Catalase {ECO:0000256|RuleBase:RU000498}; EC=1.11.1.6 {ECO:0000256|RuleBase:RU000498};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Catalase n=1 Tax=Variovorax sp. CF313 RepID=J2L0B5_9BURK
SCNpilot_cont_300_bf_scaffold_174_curated_118
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(126175..127494)
DNA (1320bp) protein (440aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CNC3_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS17539.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_174_curated_119
Acinetobacter baumannii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127494..128561)
DNA (1068bp) protein (356aa)
Uncharacterized protein n=2 Tax=Acinetobacter baumannii RepID=L9MMQ5_ACIBA
Uncharacterized protein {ECO:0000313|EMBL:KCX70533.1}; TaxID=1310661 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.;" source="Acinetobacter baumannii 855125.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_174_curated_120
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(128561..131215)
DNA (2655bp) protein (885aa)
Type VI secretion system, Vgr family protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XJM3_VARPD
Type VI secretion system, Vgr family protein {ECO:0000313|EMBL:AGU52778.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
type VI secretion system, Vgr family protein
Displaying items 91-120 of 190 in total

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