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SCNpilot_cont_300_bf_scaffold_174_curated_161

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(192512..192985)

Top 3 Functional Annotations

Value Algorithm Source
type VI secretion protein n=1 Tax=Variovorax paradoxus RepID=UPI000380CF96 similarity UNIREF
DB: UNIREF100
  • Identity: 55.1
  • Coverage: 156.0
  • Bit_score: 178
  • Evalue 4.10e-42
Uncharacterized protein ImpD {ECO:0000313|EMBL:CDS48491.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 51.9
  • Coverage: 154.0
  • Bit_score: 175
  • Evalue 6.40e-41
hypothetical protein; K11903 type VI secretion system secreted protein Hcp similarity KEGG
DB: KEGG
  • Identity: 47.1
  • Coverage: 157.0
  • Bit_score: 168
  • Evalue 2.30e-39

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Taxonomy

Polaromonas sp. CG9_12 → Polaromonas → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 474
ATGATCGACTGCCATTTCAAGATCGACGGCGTCAAGGGCGAGGCCGTGCACAAGGACCACAAGGAAGAGATCGAGCTCATGAGCTGGAGCTGGAACGTGCACAACGCCACCTGCACGGTCGGCGGCGGCTCGTCGGTCGGCAAGGGATCGCCTGGCATGGTCACCCTGACCAAGAAGTTCGACAGCGCCTCGCCCACGCTCGCCAAGGCCTGCGCCAACGGCAAGCACTTCGACAAGGCCACGCTGGTGATGGCCAAGTCGGGCGAAGGCCAGCAGACCTTCATGACGATCACCTTCAAGGAAGTTCGCATCGCCGACTTCAACGTGAGCGCCGCGCAAGGCGGCGAAGTGCACGAGAGCGTGGCCGTCTCGTACGGCGACATCGAGATCGCCTACAAGCCGCAGAAGGCCGACGGCACGATGGGCGGCGACATCAAGTTCGGCTGGGACACCCGCACCACCGAGACGCGCTGA
PROTEIN sequence
Length: 158
MIDCHFKIDGVKGEAVHKDHKEEIELMSWSWNVHNATCTVGGGSSVGKGSPGMVTLTKKFDSASPTLAKACANGKHFDKATLVMAKSGEGQQTFMTITFKEVRIADFNVSAAQGGEVHESVAVSYGDIEIAYKPQKADGTMGGDIKFGWDTRTTETR*