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SCNpilot_cont_300_bf_scaffold_24_curated_13

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(11352..11861)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Acidovorax sp. CF316 RepID=J0U1Q6_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 72.0
  • Coverage: 157.0
  • Bit_score: 233
  • Evalue 1.50e-58
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJE50082.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.0
  • Coverage: 157.0
  • Bit_score: 233
  • Evalue 2.10e-58
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 58.3
  • Coverage: 168.0
  • Bit_score: 198
  • Evalue 1.70e-48

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Taxonomy

Acidovorax sp. CF316 → Acidovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 510
ATGACCTCCGCTCACGCCGCTGCCAACGGCGCCATGCACACCTTCTACACGGAACACCATGGATGGCTCAGCGCCTGGCTGCGACGGCGGCTCGGGTGCTCGCACAGCGCCGCCGACCTTGCACAGGACACCTTCGTGCGCGTGCTGCTGCGCCCGCAGGTACTGCCCACGCTGCGCGAGCCGCGCGCCTATCTCTCCACGCTCGCCAAGGGCGTCGTCAGCGAACACTGGCGCCGCCAGGCCCTGGAGCGCGCCTACCTGGAGACGCTGGCGCTGCTGCCCGAACCGCTGGCGCTGTCGCCCGAAGAACGGCTCTCGCTGCTGCAGACGCTGGACGAGATCGACGCCATGCTGGACGGCATGTCGCCCAAGGCACGCGAGGCCTTCGTGCTGTCGCAGCTCGAAGGCCTGACCTACGCCGCGATCGCCGAGCGGCTGCAGATCAGCGAGCGCACCGTCAAGCGCTACATGCAGCAGGGTTTCGAGCGCTGCCTGGCGCTGGTGGAATGA
PROTEIN sequence
Length: 170
MTSAHAAANGAMHTFYTEHHGWLSAWLRRRLGCSHSAADLAQDTFVRVLLRPQVLPTLREPRAYLSTLAKGVVSEHWRRQALERAYLETLALLPEPLALSPEERLSLLQTLDEIDAMLDGMSPKAREAFVLSQLEGLTYAAIAERLQISERTVKRYMQQGFERCLALVE*