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SCNpilot_cont_300_bf_scaffold_24_curated

Search features with annotation key words

Displaying items 1-30 of 718 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_24_curated_1
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60..305)
DNA (246bp) protein (82aa)
Uncharacterized protein {ECO:0000313|EMBL:AJK50217.1}; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
SCNpilot_cont_300_bf_scaffold_24_curated_2
unknown

Not on your lists

comp(826..1413)
DNA (588bp) protein (196aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_24_curated_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1563..1823)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V2V1_VARPE
Variovorax paradoxus strain MEDvA23 contig_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ36254.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_24_curated_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2156..2698)
DNA (543bp) protein (181aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UY84_VARPE
activator of hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:ADU36614.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_24_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2734..3075)
DNA (342bp) protein (114aa)
ArsR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00037479C6
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ACS19850.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_24_curated_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3261..4151
DNA (891bp) protein (297aa)
Beta-lactamase {ECO:0000256|RuleBase:RU361140, ECO:0000256|SAAS:SAAS00063099}; EC=3.5.2.6 {ECO:0000256|RuleBase:RU361140, ECO:0000256|SAAS:SAAS00063099};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
beta-lactamase (EC:3.5.2.6); K01467 beta-lactamase [EC:3.5.2.6]
Beta-lactamase class A n=1 Tax=Variovorax sp. CF313 RepID=J2KK32_9BURK
SCNpilot_cont_300_bf_scaffold_24_curated_7
unknown

Not on your lists

4439..4678
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_24_curated_8
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4695..5543)
DNA (849bp) protein (283aa)
Putative TIM-barrel fold metal-dependent hydrolase n=1 Tax=Burkholderia sp. BT03 RepID=J2H0X2_9BURK
Amidohydrolase 2 {ECO:0000313|EMBL:EUC20408.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. BT03.;"
amidohydrolase 2
SCNpilot_cont_300_bf_scaffold_24_curated_9

Not on your lists

comp(5575..6198)
DNA (624bp) protein (208aa)
Hly-III family protein n=1 Tax=uncultured bacterium BLR1 RepID=B5L5U2_9BACT
Hly-III family protein {ECO:0000313|EMBL:ACH58977.1}; TaxID=506512 species="Bacteria; environmental samples.;" source="uncultured bacterium BLR1.;"
hemolysin III family channel protein; K11068 hemolysin III
SCNpilot_cont_300_bf_scaffold_24_curated_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6236..7633)
DNA (1398bp) protein (466aa)
glpQ; glycerophosphoryl diester phosphodiesterase (EC:3.1.4.46); K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
glycerophosphoryl diester phosphodiesterase n=1 Tax=Variovorax paradoxus RepID=UPI00035D34A5
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:EJL73439.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_24_curated_11
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7762..10266)
DNA (2505bp) protein (835aa)
TonB-dependent siderophore receptor n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BW95_DELAS
TonB-dependent siderophore receptor {ECO:0000313|EMBL:ABX35911.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_300_bf_scaffold_24_curated_12
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10363..11355)
DNA (993bp) protein (331aa)
Fe2+-dicitrate sensor, membrane component n=1 Tax=Acidovorax sp. CF316 RepID=J0KFT9_9BURK
Fe2+-dicitrate sensor, membrane component {ECO:0000313|EMBL:EJE50083.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
anti-FecI sigma factor FecR
SCNpilot_cont_300_bf_scaffold_24_curated_13
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11352..11861)
DNA (510bp) protein (170aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Acidovorax sp. CF316 RepID=J0U1Q6_9BURK
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJE50082.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_24_curated_14
Endozoicomonas numazuensis, Endozoicomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11938..12714)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000381776D
Tellurite resistance protein TehB {ECO:0000313|EMBL:KEQ12116.1}; TaxID=1137799 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Endozoicomonas.;" source="Endozoicomonas numazuensis.;"
methyltransferase family protein
SCNpilot_cont_300_bf_scaffold_24_curated_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12711..13217)
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035F622E
Variovorax paradoxus strain MEDvA23 contig_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ32050.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
appr-1-p processing domain-containing protein
SCNpilot_cont_300_bf_scaffold_24_curated_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13394..14389
DNA (996bp) protein (332aa)
TRAP-type C4-dicarboxylate transport system, periplasmic component n=1 Tax=Variovorax sp. CF313 RepID=J3CKJ7_9BURK
TRAP-type C4-dicarboxylate transport system, periplasmic component {ECO:0000313|EMBL:EJL73444.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
family 7 extracellular solute-binding protein
SCNpilot_cont_300_bf_scaffold_24_curated_17
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14398..15414)
DNA (1017bp) protein (339aa)
Transcriptional regulator, AraC family n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21WS8_RHOFD
AraC family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
SCNpilot_cont_300_bf_scaffold_24_curated_18
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15557..16348
DNA (792bp) protein (264aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:KJZ64090.1}; EC=4.2.1.17 {ECO:0000313|EMBL:KJZ64090.1};; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
Enoyl-CoA hydratase/isomerase n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0B7W9_ALCFA
enoyl-CoA hydratase
SCNpilot_cont_300_bf_scaffold_24_curated_19
unknown

Not on your lists

comp(16377..17030)
DNA (654bp) protein (218aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_24_curated_20
Ruegeria sp. ANG-S4, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17027..18370)
DNA (1344bp) protein (448aa)
ABC-type sugar transport system periplasmic component-like protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EI16_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KIC47211.1}; TaxID=1577904 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria sp. ANG-S4.;"
periplasmic binding protein/LacI transcriptional regulator; K02058 simple sugar transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_24_curated_21
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18582..19967
DNA (1386bp) protein (462aa)
aldehyde dehydrogenase family protein; K08324 aldehyde dehydrogenase family protein [EC:1.2.1.-]
Aldehyde dehydrogenase family protein n=2 Tax=Burkholderia cenocepacia RepID=B4EDR4_BURCJ
Aldehyde dehydrogenase family protein {ECO:0000313|EMBL:CAR51485.1}; TaxID=216591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656; / NCTC 13227 / J2315 / CF5610) (Burkholderia cepacia (strain J2315)).;"
SCNpilot_cont_300_bf_scaffold_24_curated_22
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19995..21545
DNA (1551bp) protein (517aa)
Wenxma_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ69242.1}; EC=3.6.3.17 {ECO:0000313|EMBL:KIQ69242.1};; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
rbsA3; Ribose import ATP-binding protein RbsA 3 (EC:3.6.3.17)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035EB53D
SCNpilot_cont_300_bf_scaffold_24_curated_23
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21542..22507
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003827FF2
ABC transporter permease {ECO:0000313|EMBL:KGM31452.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
monosaccharide ABC transporter membrane protein; K10440 ribose transport system permease protein
SCNpilot_cont_300_bf_scaffold_24_curated_24
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22504..23448
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037333B7
ABC transporter permease {ECO:0000313|EMBL:KKB07042.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ribose transporter permease RbsC
SCNpilot_cont_300_bf_scaffold_24_curated_25
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23539..24699
DNA (1161bp) protein (387aa)
Putative ABC transporter, periplasmic solute-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CF39_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM31455.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
substrate-binding component of ABC transporter
SCNpilot_cont_300_bf_scaffold_24_curated_26
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24699..26414
DNA (1716bp) protein (572aa)
GMC oxidoreductase n=3 Tax=Burkholderia cenocepacia RepID=T0EKS2_9BURK
putative oxidoreductase
GMC oxidoreductase {ECO:0000313|EMBL:ERI30707.1}; TaxID=985077 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia BC7.;"
SCNpilot_cont_300_bf_scaffold_24_curated_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26419..27846)
DNA (1428bp) protein (476aa)
GTP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000378094C
GTP-binding protein hsr1-like protein
GTP-binding protein HSR1-related protein {ECO:0000313|EMBL:ADU36626.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_24_curated_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27843..29255)
DNA (1413bp) protein (471aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UY97_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU36627.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_24_curated_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29626..30207)
DNA (582bp) protein (194aa)
Regulatory protein TetR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZB7_VARPE
Variovorax paradoxus strain MEDvA23 contig_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ32041.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
TetR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_24_curated_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30291..30722
DNA (432bp) protein (144aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZB8_VARPE
Variovorax paradoxus strain MEDvA23 contig_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ32040.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
glyoxalase/bleomycin resistance protein/dioxygenase
Displaying items 1-30 of 718 in total

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