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SCNpilot_cont_300_bf_scaffold_24_curated_29

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(29626..30207)

Top 3 Functional Annotations

Value Algorithm Source
Regulatory protein TetR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZB7_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 93.8
  • Coverage: 193.0
  • Bit_score: 345
  • Evalue 4.10e-92
Variovorax paradoxus strain MEDvA23 contig_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ32041.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.3
  • Coverage: 193.0
  • Bit_score: 347
  • Evalue 1.20e-92
TetR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 93.8
  • Coverage: 193.0
  • Bit_score: 345
  • Evalue 1.30e-92

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 582
ATGGCTACCAATCGCGAACGCACCGAAAGCACCCAGCTCGCCCTGCTAGAAGCCGCCCGCGCGCTCTTCGTCAGCAAGGGCTACGGCGACACCTCCACGCCGGAGATCGCCCTGGCGGCCGGCATCACGCGCGGCGCTCTGTACCACCACTTCGCCGACAAGCGCGACCTCTTCCGGCAGGTGCTTGCGCGCGAGGCGATGGCCGTGGCGGCCGACATCGAGGCCGCCACGCCCGAGCGGCTGGGCCCGCGCGAAGCCCTGCTCGAAGGCAGCGAGGCCTACCTGAACGCCATGACCGTGCCGGGCCGCACGCGGCTTTTGCTGGTGGACGGCCCTGCCGTGCTGGGCATGGCGGAAATCATGGCGATCGACGACGCCAACGCCGCGCACTCGCTGCGCCAGGGCCTCGCGCGCGCGGGCATGGGGCGCGGCGAAGTCTCGGTCGATGCGCTGTCGCAGTTGCTGTCGGCCGCCTTCGACCGCGCAGCGCTGGAAATCGACGCGGGCGCCGATGCGAAAGAAGTCCGCGCGGCGATGCGCTGGCTGGTGGAACAGGCACTGGGGCCCGAAAAGAAGCGCTGA
PROTEIN sequence
Length: 194
MATNRERTESTQLALLEAARALFVSKGYGDTSTPEIALAAGITRGALYHHFADKRDLFRQVLAREAMAVAADIEAATPERLGPREALLEGSEAYLNAMTVPGRTRLLLVDGPAVLGMAEIMAIDDANAAHSLRQGLARAGMGRGEVSVDALSQLLSAAFDRAALEIDAGADAKEVRAAMRWLVEQALGPEKKR*