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SCNpilot_cont_300_bf_scaffold_130_curated_35

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(33101..33850)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.8
  • Coverage: 249.0
  • Bit_score: 496
  • Evalue 2.60e-137
pseudouridine synthase; K06183 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] similarity KEGG
DB: KEGG
  • Identity: 95.9
  • Coverage: 246.0
  • Bit_score: 489
  • Evalue 5.40e-136
Pseudouridine synthase n=1 Tax=Variovorax sp. CF313 RepID=J2KG35_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 96.8
  • Coverage: 249.0
  • Bit_score: 496
  • Evalue 1.80e-137

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 750
ATGCACCTGCAAGACATCCTCTACACCCAGGGCTTCGGCACGCGCCGCGTGTGCGCGGGCCTGGTCCAGCAAGGCCACGTGACCATCGCGGGCCAGGCCGTGACCGACCCCTTCGCCGACCTCGACCCCGACGGCCTGCTCTACACGGTCCAGGGCACGCCGTGGGCGTACCACGAGAAGGCCTACCTGATGCTGCACAAGCCGGCCGGCACAGAGTGCTCGCAGAAGCCCTCGACCTACCCGAGCATCTACACGCTGCTGCCGTCGCCGCTGCGCCTGCGGCCCAACAAGGGGGCGGTGCAGGGCGTGCAGGCCATCGGCCGGCTCGACCAGGACACCACTGGCCTGCTGCTTTTGACCGACGACGGCCAGTTCATCCACAAGATGGGCTCGCCCAAGCACCACGTGCCCAAGGTCTACGAGGTGACGGCCAAGCACCCGGTGGACGAGGCGCAGATCGCCAAACTGCTTGCCGGCGTGGTGCTCGACGACGATCCGAAGCCCGTGCGCGCGGCCGCCTGCGAGTCCGACAGCCCGCTGCACCTGCGGCTCACGCTCACCGAGGGCAAGTACCACCAAGTCAAGCGCATGCTGGCCGCGGTCGGCAACCGGGTCGAGGGGCTGCACCGCTCGCGCATCGGCGATCTCGCGCTGCCCGAAGACCTGGCACCGGGGCAGTGGCGCTGGCTCACGGCCGAAGAGGTCGCGGCGCTGCGCGCGCCGGCCAAGCCCGGCAAACTTTCGAAGTAA
PROTEIN sequence
Length: 250
MHLQDILYTQGFGTRRVCAGLVQQGHVTIAGQAVTDPFADLDPDGLLYTVQGTPWAYHEKAYLMLHKPAGTECSQKPSTYPSIYTLLPSPLRLRPNKGAVQGVQAIGRLDQDTTGLLLLTDDGQFIHKMGSPKHHVPKVYEVTAKHPVDEAQIAKLLAGVVLDDDPKPVRAAACESDSPLHLRLTLTEGKYHQVKRMLAAVGNRVEGLHRSRIGDLALPEDLAPGQWRWLTAEEVAALRAPAKPGKLSK*