ggKbase home page

SCNpilot_cont_300_bf_scaffold_130_curated

Search features with annotation key words

Displaying items 1-30 of 337 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_130_curated_1
unknown

Not on your lists

comp(3..89)
DNA (87bp) protein (29aa)
Outer membrane protein (Porin) n=1 Tax=Variovorax sp. CF313 RepID=J3CB80_9BURK
SCNpilot_cont_300_bf_scaffold_130_curated_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

355..1125
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CVR2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79479.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
nuclease-like domain-containing protein
SCNpilot_cont_300_bf_scaffold_130_curated_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1130..1819
DNA (690bp) protein (230aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Variovorax sp. CF313 RepID=J2L2K5_9BURK
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EJL79478.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
winged helix family two component transcriptional regulator
SCNpilot_cont_300_bf_scaffold_130_curated_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1889..4246
DNA (2358bp) protein (786aa)
LPS-assembly protein LptD n=1 Tax=Variovorax paradoxus B4 RepID=T1XIZ2_VARPD
lptD; LPS-assembly protein LptD
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_130_curated_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5131..5973)
DNA (843bp) protein (281aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Variovorax sp. CF313 RepID=J3CW72_9BURK
Periplasmic component of amino acid ABC-type transporter/signal transduction system {ECO:0000313|EMBL:EJL79476.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ABC transporter, substrate-binding protein
SCNpilot_cont_300_bf_scaffold_130_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6038..6829)
DNA (792bp) protein (264aa)
ABC transporter; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
ABC transporter related n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D211_VARPS
ABC transporter related {ECO:0000313|EMBL:ACS22931.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_130_curated_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6826..7605)
DNA (780bp) protein (260aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D210_VARPS
polar amino acid ABC transporter, inner membrane subunit; K02029 polar amino acid transport system permease protein
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ACS22930.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_130_curated_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7627..8328)
DNA (702bp) protein (234aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Variovorax sp. CF313 RepID=J2L2J9_9BURK
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EJL79473.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
amino acid ABC transporter, permease protein
SCNpilot_cont_300_bf_scaffold_130_curated_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8369..9121)
DNA (753bp) protein (251aa)
Short-chain alcohol dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2TLJ7_9BURK
Short-chain alcohol dehydrogenase {ECO:0000313|EMBL:EJL79472.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative oxidoreductase, SDR family
SCNpilot_cont_300_bf_scaffold_130_curated_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9288..10052)
DNA (765bp) protein (255aa)
UPF0271 protein PMI12_00649 n=1 Tax=Variovorax sp. CF313 RepID=J3CW68_9BURK
UPF0271 protein PMI12_00649 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LamB/YcsF family protein
SCNpilot_cont_300_bf_scaffold_130_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10081..10479)
DNA (399bp) protein (133aa)
Biotin/lipoyl attachment domain-containing protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XLW0_VARPD
biotin/lipoyl attachment domain-containing protein
Biotin/lipoyl attachment domain-containing protein {ECO:0000313|EMBL:AGU53289.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_130_curated_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10598..11581)
DNA (984bp) protein (328aa)
Biotin-dependent carboxylase-like protein n=1 Tax=Variovorax sp. CF313 RepID=J3CVQ5_9BURK
Biotin-dependent carboxylase-like protein {ECO:0000313|EMBL:EJL79469.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
urea amidolyase related protein
SCNpilot_cont_300_bf_scaffold_130_curated_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11578..12237)
DNA (660bp) protein (220aa)
TIGR00370 family protein n=1 Tax=Variovorax sp. CF313 RepID=J2L2J2_9BURK
TIGR00370 family protein {ECO:0000313|EMBL:EJL79468.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative allophanate hydrolase, subunit 1
SCNpilot_cont_300_bf_scaffold_130_curated_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12234..13586)
DNA (1353bp) protein (451aa)
accC; biotin carboxylase AccC (EC:6.3.4.14 6.4.1.2)
Acetyl-CoA carboxylase, biotin carboxylase subunit n=1 Tax=Variovorax sp. CF313 RepID=J2TLI9_9BURK
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:EJL79467.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_130_curated_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13600..14094)
DNA (495bp) protein (165aa)
Biotin carboxyl carrier protein n=1 Tax=Variovorax sp. CF313 RepID=J3CW65_9BURK
Biotin carboxyl carrier protein {ECO:0000313|EMBL:EJL79466.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
acetyl-CoA carboxylase, biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
SCNpilot_cont_300_bf_scaffold_130_curated_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14158..15129)
DNA (972bp) protein (324aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2KGZ0_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL79465.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
nitrogen assimilation transcriptional regulator
SCNpilot_cont_300_bf_scaffold_130_curated_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15240..16454
DNA (1215bp) protein (405aa)
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Variovorax sp. CF313 RepID=J3CVQ1_9BURK
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:EJL79464.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative aspartate aminotransferase
SCNpilot_cont_300_bf_scaffold_130_curated_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16481..17152
DNA (672bp) protein (224aa)
Demethylmenaquinone methyltransferase n=1 Tax=Variovorax sp. CF313 RepID=J2L2I8_9BURK
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:EJL79463.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_130_curated_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17162..18088)
DNA (927bp) protein (309aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2TLI4_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL79462.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transcriptional regulator, LysR family
SCNpilot_cont_300_bf_scaffold_130_curated_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18197..19135
DNA (939bp) protein (313aa)
dihydrodipicolinate synthetase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
Dihydrodipicolinate synthase/N-acetylneuraminate lyase n=1 Tax=Variovorax sp. CF313 RepID=J3CW62_9BURK
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:EJL79461.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_130_curated_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19194..20165
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6R0_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU36016.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_130_curated_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20155..20865
DNA (711bp) protein (237aa)
3-oxoacyl-ACP reductase n=1 Tax=Variovorax paradoxus RepID=UPI00037AD3A8
short-chain dehydrogenase/reductase sdr
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADU36015.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_130_curated_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20903..22069
DNA (1167bp) protein (389aa)
mandelate racemase n=1 Tax=Variovorax paradoxus RepID=UPI000360F324
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:EJL79458.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
mandelate racemase/muconate lactonizing protein
SCNpilot_cont_300_bf_scaffold_130_curated_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22207..22992
DNA (786bp) protein (262aa)
exodeoxyribonuclease iii xth; K01142 exodeoxyribonuclease III [EC:3.1.11.2]
Exodeoxyribonuclease III n=1 Tax=Variovorax sp. CF313 RepID=J3CVN8_9BURK
Exodeoxyribonuclease III {ECO:0000313|EMBL:EJL79166.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_130_curated_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22997..23548
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KG45_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79165.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_130_curated_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23595..25130)
DNA (1536bp) protein (512aa)
Nitrogen regulation protein NR(I) n=1 Tax=Variovorax sp. CF313 RepID=J3CV71_9BURK
Nitrogen regulation protein NR(I) {ECO:0000313|EMBL:EJL79164.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
nitrogen regulation protein NR(I)
SCNpilot_cont_300_bf_scaffold_130_curated_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25158..26237)
DNA (1080bp) protein (360aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
nitrogen specific signal transduction histidine kinase NtrB; K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
Signal transduction histidine kinase, nitrogen specific n=1 Tax=Variovorax sp. CF313 RepID=J2L1P6_9BURK
SCNpilot_cont_300_bf_scaffold_130_curated_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26266..26775)
DNA (510bp) protein (170aa)
signal peptide protein n=1 Tax=Variovorax paradoxus RepID=UPI0003659150
signal peptide protein
Putative signal peptide protein {ECO:0000313|EMBL:ACS18284.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_130_curated_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26916..28331)
DNA (1416bp) protein (472aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2]
Glutamine synthetase n=1 Tax=Variovorax sp. CF313 RepID=J3CVN5_9BURK
SCNpilot_cont_300_bf_scaffold_130_curated_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28478..29290)
DNA (813bp) protein (271aa)
damage-inducible protein n=1 Tax=Variovorax paradoxus RepID=UPI00037E1512
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17678.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
molybdopterin binding domain
Displaying items 1-30 of 337 in total

View Taxonomy