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SCNpilot_cont_300_bf_scaffold_130_curated_4

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 1889..4246

Top 3 Functional Annotations

Value Algorithm Source
LPS-assembly protein LptD n=1 Tax=Variovorax paradoxus B4 RepID=T1XIZ2_VARPD similarity UNIREF
DB: UNIREF100
  • Identity: 53.2
  • Coverage: 850.0
  • Bit_score: 874
  • Evalue 1.00e-250
lptD; LPS-assembly protein LptD similarity KEGG
DB: KEGG
  • Identity: 53.2
  • Coverage: 850.0
  • Bit_score: 874
  • Evalue 3.20e-251
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 53.2
  • Coverage: 850.0
  • Bit_score: 874
  • Evalue 1.40e-250

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2358
ATGGCGCTTTCGCTCATGCTCCTGCTGCACGCCCGCAGCGCCATCGCGCAGGAAACGCAGGAAAGCTGGATCGAAGCCCCCATGACGCTGCGGCGCACGCCGCAGCTGACCGAAACCATTCCGCAGGCCGAGCGCGGCATGCGCCCCAGCTTGGTGGACGGCGACCGCATTTCCGGCCGGCCCGATCTCGAGGTGGTGGTGGAAGGCGATGCGTCGCTGCGGCGCGGCGACACCCACGTCACCGCCGACCGCCTCACCTACCAGCCGCCCGGCGACCTCGCCACGGCCACCGGCAACGTGCACCTGAACCAGGGCGGCAACGTGTACGAAGGGCCCGAGCTGCACCTGAAGGTCGAGAGCTTCGAGGGCTTCTTCAACCACGTGCGCTACACGCTGCTGGAGACCGGCGCGCACGGCGAGGCCGAGCGCATCGACTTCGTCGACCCGAACGTTTCGGTGGCGCGGCATGCCACCTACACCACCTGCCTGCGCGAGAACTACGCCGGCTGGGTGCCCGCGTGGATGCTGAGCGCGGTGACGCTGACCACCGACAACGAGACCAACCTGGCCACCGCCACCGACGCGCGGATCAGCTTCCTGGGCCTGACCACGCCTTCGCTGCCGTCGGTGAGCTTTCCGCTGAACAACGCGCGCCAGAGCGGCCTGCTGCCGCCGGTGATCGGCTTCGACACCACCAACGGCTTCGAGTACCTGCAGCCCTACTACTGGAACATCGCGCCCAACCGCGACCTCACGCTGTACCCCGAGATCATGAGCAACCGCGGCGTGAACCTGGGCACCGAGTTCCGCTACCTCGAGAAGGACTACAGCGGCCAGATCCGCGTCGACGAGATGCCCAGCGATAGCCTGCGCGATCGCAACCGCTGGGGCCTGTGGGCCAAGCACGACCAGAAGCTGGACCCCAAGCCCTTCGGGCTCGATTCGCTGACCACCTCGTTCAACATCAACCGCGTGAGCGACGACGACTACTGGCGCGACTTCTCGCACACGCCCACGCTGACCTCGCGCCAGCTCACCAACGAGGCCGACCTGAACTGGACCAAGGGCGACTGGAGCGGGCAGGCGCGCACGCTCTCTTACCAGACGCTGCAATACGCGGCCTCGCCGATCACGCCCTCGTACAACCGCGTGCCGCAGGTCACTGCCAACTACAACAAGTACGACTGGCATGGCCTGGACGTGTCGGGCACGCTGGACTACACGCGCTTCCAGGTCGACTCGGCCTATGCGCCCACGCTCAACGGCATCAAGCAGCCCGATGGCGAGCGCGTGGTGGGCAACCTTCAGATCAGCCGGCCGTGGGTCGCGCCGGGTGGCTTCTTCATTCCGAAGCTGCTGCTGCATACCGCCTCCTACCAGCTCGCGTCGCCACTGGCGGACGGCCGCACCAGCATCACCAGCGTGGTGCCGACGGTGAGCCTGGACAGCGGGCTGGTGTTCGAGCGCGACACCAGCCTCTTCGGCAGCGCCTGGCGCCAGACGCTGGAGCCGCGCGCCTTCTACGTGCACACGCCCTACCGCGACCAGAGCCAGTTGCCGGTGTACGACACCGCCGCCAACGACGTGAGCTTTGCCACGCTCTATACCGAGAACGCGTTCTCGGGCAACGACCGTGTATCGGACACCAACACGCTCACCACCGGCGTGACGACGCGGCTGATCGACCCTGTGACCGGCGCGGAGTCGGCGCGCTTCGGCATCGCGCAGCGTTTTCGCTTCAGCGACCAGAACGTGACGCTGCCCGGCGGCACGGCCGTGACGGACCGTTCGGGCGACTTCATCCTGGGCGGGCAGGTGCACTGGAATCCGAAGTGGAGCATCGACGGCCTGGCGCAGTACAACATGGACACGGGCAAGTCGACACGCGACGCGCTCACGCTGCGCTACACGCCGGCGCAGTACCACACGCTCACCGCGGCCTTCCGCTACCAGGCGGACAGCACGACGACGGCGAACGACGGCACGAAGACGGTCGACTTCAACTGGCAGTGGCCGTTGAGCGACCTGACGGGCGGGCTGATGGGTGGCAAGTCGGCGGCGGACCCGGGGCGCTGGTATGCGGTGGGCCGGCTGAGCTACAGCCTGCACGATCGCGCGCTGTCGGACAGCCTGGTGGGCGCGGAGTACAACGCCTGCTGCTGGGTGGGCCGCATCGTGCTCGAGCGGCTGGTGACAGGCCGCGCCACGCCCGACACGCGGTTGATGTTCCAGATCCAGTTCAATGGCTTCGGCAACATCGGCTCGAATCCGACGAGCACGCTGCTGCAGAACATCCAGGGGTATCAGCCGCTGAACCAGTCTACGCAGCAGCCTAGCCGGTTTACGAACTACGACTGA
PROTEIN sequence
Length: 786
MALSLMLLLHARSAIAQETQESWIEAPMTLRRTPQLTETIPQAERGMRPSLVDGDRISGRPDLEVVVEGDASLRRGDTHVTADRLTYQPPGDLATATGNVHLNQGGNVYEGPELHLKVESFEGFFNHVRYTLLETGAHGEAERIDFVDPNVSVARHATYTTCLRENYAGWVPAWMLSAVTLTTDNETNLATATDARISFLGLTTPSLPSVSFPLNNARQSGLLPPVIGFDTTNGFEYLQPYYWNIAPNRDLTLYPEIMSNRGVNLGTEFRYLEKDYSGQIRVDEMPSDSLRDRNRWGLWAKHDQKLDPKPFGLDSLTTSFNINRVSDDDYWRDFSHTPTLTSRQLTNEADLNWTKGDWSGQARTLSYQTLQYAASPITPSYNRVPQVTANYNKYDWHGLDVSGTLDYTRFQVDSAYAPTLNGIKQPDGERVVGNLQISRPWVAPGGFFIPKLLLHTASYQLASPLADGRTSITSVVPTVSLDSGLVFERDTSLFGSAWRQTLEPRAFYVHTPYRDQSQLPVYDTAANDVSFATLYTENAFSGNDRVSDTNTLTTGVTTRLIDPVTGAESARFGIAQRFRFSDQNVTLPGGTAVTDRSGDFILGGQVHWNPKWSIDGLAQYNMDTGKSTRDALTLRYTPAQYHTLTAAFRYQADSTTTANDGTKTVDFNWQWPLSDLTGGLMGGKSAADPGRWYAVGRLSYSLHDRALSDSLVGAEYNACCWVGRIVLERLVTGRATPDTRLMFQIQFNGFGNIGSNPTSTLLQNIQGYQPLNQSTQQPSRFTNYD*