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SCNpilot_cont_300_bf_scaffold_118_curated_29

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 17064..17807

Top 3 Functional Annotations

Value Algorithm Source
response regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003784A6A similarity UNIREF
DB: UNIREF100
  • Identity: 94.8
  • Coverage: 248.0
  • Bit_score: 454
  • Evalue 8.00e-125
winged helix family two component transcriptional regulator; K11329 two-component system, OmpR family, response regulator RpaB similarity KEGG
DB: KEGG
  • Identity: 92.9
  • Coverage: 252.0
  • Bit_score: 450
  • Evalue 4.70e-124
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADU39724.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.9
  • Coverage: 252.0
  • Bit_score: 450
  • Evalue 2.10e-123

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 744
ATGGTCAGCGAAGTCATTCGCCACATGCTTGCCAGGAGGCACAATCCCGCCATGCCGCGCATCCTGCTGATCGACGACGACGAACACCTCGCCGCGCCGCTGACCACCTACTTCGCACGCTTCGGCTGCACGCTCGAAAGCGCCGTGCGCCCGAGCGAAGGCCTTGCCAAGCTGCGGGCCGGCCAGTACGACGCGGCGATCCTCGACGTCATGCTGCCCGAGATGGACGGCTTCGAACTGTGCCGCGAGATCCGCAAGGAAAGCGACATTCCCATCGTGATGCTCACCGCGCGCGGCGAGGTGATGGACCGCGTGGTCGGCCTCGAACTGGGCGCCGACGACTACGTGCCCAAGCCCTTCGAGCCGCGCGAGTTGGTGGCGCGCGTGCAGACCATCCTGCGCCGCCAGCGCAGCGCGCCGCCGGCGGCGAGCAGCGCGCAGCACCGCGTGTTCGACGGCCTGTCGATCGACCTCGACCGCCGCCAGGTGCTGCGCCAGGGCGAGCGCGTGGAACTCACCGGCACCGAGTTCGAACTGCTCGCGCTGCTGGCCGGCGAGCCCGGCAAGGTCTTCAGCCGCGACGACATCCTCAACCGCCTGCGCGGCCACGAGGCCGAGCTGTACACGCGCGCGGTCGACATCGTGGTGAGCCGCCTGCGCAAGAAGCTGGAGCCGCTGGACTGCATCAAGACCCTGCGCAATGCCGGCTACGCGCTGGCCGTGGCACGCAGCGAGACTGCATGA
PROTEIN sequence
Length: 248
MVSEVIRHMLARRHNPAMPRILLIDDDEHLAAPLTTYFARFGCTLESAVRPSEGLAKLRAGQYDAAILDVMLPEMDGFELCREIRKESDIPIVMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTILRRQRSAPPAASSAQHRVFDGLSIDLDRRQVLRQGERVELTGTEFELLALLAGEPGKVFSRDDILNRLRGHEAELYTRAVDIVVSRLRKKLEPLDCIKTLRNAGYALAVARSETA*