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SCNpilot_cont_1000_p_scaffold_316_curated

Search features with annotation key words

Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_316_curated_1
Planctopirus limnophila, Planctopirus, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2..808)
DNA (807bp) protein (269aa)
Transglutaminase domain protein n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SWU4_PLAL2
transglutaminase
Transglutaminase domain protein {ECO:0000313|EMBL:ADG67444.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
SCNpilot_cont_1000_p_scaffold_316_curated_2
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(828..1802)
DNA (975bp) protein (325aa)
L-glutaminase (EC:3.5.1.2)
Glutaminase {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476}; EC=3.5.1.2 {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476};; TaxID=765911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
Glutaminase n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3Y8U3_THIV6
SCNpilot_cont_1000_p_scaffold_316_curated_3
Cyanobium gracile, Cyanobium, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(1810..3006)
DNA (1197bp) protein (399aa)
Sodium--glutamate symport carrier GltS n=1 Tax=Cyanobium gracile (strain ATCC 27147 / PCC 6307) RepID=K9P7K5_CYAGP
sodium--glutamate symport carrier GltS
Sodium--glutamate symport carrier GltS {ECO:0000313|EMBL:AFY28711.1}; TaxID=292564 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanobium.;" source="Cyanobium gracile (strain ATCC 27147 / PCC 6307).;"
SCNpilot_cont_1000_p_scaffold_316_curated_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(3022..4458)
DNA (1437bp) protein (479aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
pyruvate kinase; K00873 pyruvate kinase [EC:2.7.1.40]
Pyruvate kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX36_9BACT
SCNpilot_cont_1000_p_scaffold_316_curated_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(4604..5122)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTR7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY21955.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_316_curated_6
unknown

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comp(5129..5551)
DNA (423bp) protein (141aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_316_curated_7
unknown

Not on your lists

comp(5595..6056)
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_316_curated_8
unknown

Not on your lists

6279..6581
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_316_curated_9
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6623..7909)
DNA (1287bp) protein (429aa)
Outer membrane porin, OprD family n=1 Tax=Novosphingobium sp. AP12 RepID=J2GJA1_9SPHN
Outer membrane porin, OprD family {ECO:0000313|EMBL:EJL22623.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
outer membrane porin
SCNpilot_cont_1000_p_scaffold_316_curated_10
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7906..8430)
DNA (525bp) protein (175aa)
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_cont_1000_p_scaffold_316_curated_11
Gilliamella apicola, Gilliamella, Orbales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8518..9087
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B713DA
Uncharacterized protein {ECO:0000313|EMBL:KES19453.1}; TaxID=1445513 species="Bacteria; Proteobacteria; Gammaproteobacteria; Orbales; Orbaceae; Gilliamella.;" source="Gilliamella apicola SCGC AB-598-B02.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_316_curated_12
Pseudomonas sp. EGD-AK9, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9202..10317
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. EGD-AK9 RepID=U2B7S4_9PSED
Uncharacterized protein {ECO:0000313|EMBL:ERI53132.1}; TaxID=1386078 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. EGD-AK9.;"
RND family efflux transporter MFP subunit
SCNpilot_cont_1000_p_scaffold_316_curated_13
Gallaecimonas xiamenensis, Gallaecimonas, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10335..13385
DNA (3051bp) protein (1017aa)
Acriflavin resistance protein n=1 Tax=Gallaecimonas xiamenensis 3-C-1 RepID=K2IPY6_9GAMM
Acriflavin resistance protein {ECO:0000313|EMBL:EKE72161.1}; TaxID=745411 species="Bacteria; Proteobacteria; Gammaproteobacteria; Gallaecimonas.;" source="Gallaecimonas xiamenensis 3-C-1.;"
acriflavin resistance protein
SCNpilot_cont_1000_p_scaffold_316_curated_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

13417..14409
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745873
Uncharacterized protein {ECO:0000313|EMBL:EDY16665.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_316_curated_15
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14416..16056
DNA (1641bp) protein (547aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DB04_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KHK01291.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
lysophospholipase
SCNpilot_cont_1000_p_scaffold_316_curated_16
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

16181..17419
DNA (1239bp) protein (413aa)
hypothetical protein MzeaS_03339 id=3094765 bin=GWF2_Ignavibacteria_35_20 species=Rhodopirellula maiorica genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
carboxypeptidase
Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
SCNpilot_cont_1000_p_scaffold_316_curated_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

17472..18590
DNA (1119bp) protein (373aa)
L-threonine synthase {ECO:0000313|EMBL:CDM65753.1}; EC=4.2.3.1 {ECO:0000313|EMBL:CDM65753.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
putative threonine synthase; K01733 threonine synthase [EC:4.2.3.1]
Putative threonine synthase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I7F6_CALAS
SCNpilot_cont_1000_p_scaffold_316_curated_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

18583..19878
DNA (1296bp) protein (432aa)
sodium:dicarboxylate symporter id=7716553 bin=BACIGN_2 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=BACIGN_2 organism_group=Unknown_CP
sodium:dicarboxylate symporter
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
SCNpilot_cont_1000_p_scaffold_316_curated_19
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

19875..21428
DNA (1554bp) protein (518aa)
Peptidase S51 dipeptidase E n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8L4_9BACT
Peptidase S51 dipeptidase E {ECO:0000313|EMBL:EDY17236.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
biotin apo-protein ligase-like protein
SCNpilot_cont_1000_p_scaffold_316_curated_20
unknown

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21523..23373
DNA (1851bp) protein (617aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_316_curated_21
unknown

Not on your lists

23386..23943
DNA (558bp) protein (186aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_316_curated_22
unknown

Not on your lists

23936..24736
DNA (801bp) protein (267aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_316_curated_23
unknown

Not on your lists

24900..25337
DNA (438bp) protein (146aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_316_curated_24
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

25339..28800
DNA (3462bp) protein (1154aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYS3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20614.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_316_curated_25
unknown

Not on your lists

28793..29473
DNA (681bp) protein (227aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_316_curated_26
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(29482..31251)
DNA (1770bp) protein (590aa)
two-component histidine kinase id=24458830 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Bradyrhizobium sp. genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
multi-sensor signal transduction histidine kinase
Tax=RBG_16_Planctomycetes_55_9_curated
SCNpilot_cont_1000_p_scaffold_316_curated_27
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31278..31919)
DNA (642bp) protein (214aa)
two component LuxR family transcriptional regulator id=14626666 bin=bin7_NC10_sister species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
LuxR family transcriptional regulator
Tax=GWD2_Deltaproteobacteria_55_8_curated
SCNpilot_cont_1000_p_scaffold_316_curated_28
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

32388..33941
DNA (1554bp) protein (518aa)
Peptidase S51 dipeptidase E n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8L4_9BACT
Peptidase S51 dipeptidase E {ECO:0000313|EMBL:EDY17236.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
biotin apo-protein ligase-like protein
SCNpilot_cont_1000_p_scaffold_316_curated_29
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(34052..34600)
DNA (549bp) protein (183aa)
Transcriptional regulator n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6B3N5_9BACT
Transcriptional regulator {ECO:0000313|EMBL:EIQ01877.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
MarR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_316_curated_30
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34605..37760)
DNA (3156bp) protein (1052aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00036A71BC
Multidrug resistance protein {ECO:0000313|EMBL:EIT70333.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
mexB; RND multidrug efflux transporter; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
Displaying items 1-30 of 72 in total

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