ggKbase home page

SCNpilot_cont_1000_p_scaffold_2180_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2180_curated_1
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(1..1227)
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B4A1FF
outer membrane efflux protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
SCNpilot_cont_1000_p_scaffold_2180_curated_2
unknown

Not on your lists

1361..1714
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2180_curated_3
R_WOR_2_48_11, WOR-2, Bacteria

Not on your lists

comp(1862..3109)
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Microchaete sp. PCC 7126 RepID=UPI000382727F
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_48_11_curated
SCNpilot_cont_1000_p_scaffold_2180_curated_4

Not on your lists

3194..3697
DNA (504bp) protein (168aa)
Iron (Metal) dependent repressor, DtxR family n=2 Tax=unclassified Opitutaceae RepID=H1J042_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKN66667.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Mn-dependent transcriptional regulator MntR
SCNpilot_cont_1000_p_scaffold_2180_curated_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(4241..4765)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX80_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20878.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2180_curated_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(4820..6271)
DNA (1452bp) protein (484aa)
Multicopper oxidase type 3 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZ74_9BACT
Multicopper oxidase type 3 {ECO:0000313|EMBL:EDY20765.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
multicopper oxidase domain-containing protein
SCNpilot_cont_1000_p_scaffold_2180_curated_7

Not on your lists

comp(6268..7668)
DNA (1401bp) protein (467aa)
Outer membrane efflux protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZ73_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49167.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
outer membrane efflux protein
SCNpilot_cont_1000_p_scaffold_2180_curated_8

Not on your lists

comp(7919..8422)
DNA (504bp) protein (168aa)
Putative uncharacterized protein n=1 Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3DZ83_METI4
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49165.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2180_curated_9
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(8489..8740)
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017449E4
Tax=GWF2_Verrucomicrobia_62_7_curated
SCNpilot_cont_1000_p_scaffold_2180_curated_10
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(9292..9681)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPX1_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB77692.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
SCNpilot_cont_1000_p_scaffold_2180_curated_11
uncultured Acidobacteria bacterium A11, Acidobacteria, Bacteria

Not on your lists

comp(9791..10498)
DNA (708bp) protein (236aa)
RNA polymerase sigma factor n=1 Tax=uncultured Acidobacteria bacterium A11 RepID=F8TTK1_9BACT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1036854 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium A11.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_1000_p_scaffold_2180_curated_12
unknown

Not on your lists

10720..10809
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2180_curated_13
unknown

Not on your lists

11327..11512
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2180_curated_14
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

comp(11727..12623)
DNA (897bp) protein (299aa)
ATPase AAA-2 domain protein id=3857560 bin=GWF2_Lentisphaerae_49_21 species=Opitutaceae bacterium TAV5 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
ATPase
Tax=GWF2_Lentisphaerae_49_21_curated
SCNpilot_cont_1000_p_scaffold_2180_curated_15
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(12620..14149)
DNA (1530bp) protein (510aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IMP5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AHF94679.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2180_curated_16
unknown

Not on your lists

comp(14136..14387)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2180_curated_17
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

comp(14332..15453)
DNA (1122bp) protein (374aa)
id=4164431 bin=GWF2_Lentisphaerae_49_21 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
Tax=GWF2_Lentisphaerae_49_21_curated
SCNpilot_cont_1000_p_scaffold_2180_curated_18
unknown

Not on your lists

comp(15450..15680)
DNA (231bp) protein (77aa)

This feature has no annotations

Displaying 18 items

View Taxonomy