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SCNpilot_cont_1000_p_scaffold_872_curated

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_872_curated_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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1..2865
DNA (2865bp) protein (955aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D4K0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18453.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein; K09800 hypothetical protein
SCNpilot_cont_1000_p_scaffold_872_curated_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

2862..4964
DNA (2103bp) protein (701aa)
Surface antigen (D15) n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D4J9_9BACT
Surface antigen (D15) {ECO:0000313|EMBL:EDY18452.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
surface antigen (D15); K07277 outer membrane protein
SCNpilot_cont_1000_p_scaffold_872_curated_3
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(4968..5798)
DNA (831bp) protein (277aa)
pssA; phosphatidylserine synthase; K00998 phosphatidylserine synthase [EC:2.7.8.8]
CDP-diacylglycerol/serine O-phosphatidyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUA0_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_872_curated_4
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(5795..6436)
DNA (642bp) protein (214aa)
psd; phosphatidylserine decarboxylase; K01613 phosphatidylserine decarboxylase [EC:4.1.1.65]
Phosphatidylserine decarboxylase related protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU99_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_872_curated_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

6556..7089
DNA (534bp) protein (178aa)
Rhodanese domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU98_9BACT
Rhodanese domain protein {ECO:0000313|EMBL:EDY22136.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
glutaredoxin
SCNpilot_cont_1000_p_scaffold_872_curated_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

7086..7553
DNA (468bp) protein (156aa)
Nitrogen-fixing NifU domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU97_9BACT
Nitrogen-fixing NifU domain protein {ECO:0000313|EMBL:EDY22135.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
FeS cluster assembly scaffold protein NifU; K04488 nitrogen fixation protein NifU and related proteins
SCNpilot_cont_1000_p_scaffold_872_curated_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

7556..8095
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746084
FeS assembly SUF system protein SufT {ECO:0000313|EMBL:EDY22134.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
FeS assembly SUF system protein SufT
SCNpilot_cont_1000_p_scaffold_872_curated_8
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

8198..8353
DNA (156bp) protein (52aa)
hypothetical protein n=1 Tax=unclassified Verrucomicrobia (miscellaneous) RepID=UPI0003788B6A
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_872_curated_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

8360..9067
DNA (708bp) protein (236aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
pseudouridine synthase; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Pseudouridine synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D966_9BACT
SCNpilot_cont_1000_p_scaffold_872_curated_10
Pyrococcus abyssi, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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9064..9453
DNA (390bp) protein (130aa)
RutC family protein PYRAB12510 n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=Y1251_PYRAB
translation initiation inhibitor; K07567 TdcF protein
RutC family protein PYRAB12510; TaxID=272844 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus abyssi (strain GE5 / Orsay).;"
SCNpilot_cont_1000_p_scaffold_872_curated_11
unknown

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9531..10208
DNA (678bp) protein (226aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_872_curated_12
unknown

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10259..10975
DNA (717bp) protein (239aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_872_curated_13
unknown

Not on your lists

11072..11809
DNA (738bp) protein (246aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_872_curated_14
unknown

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comp(11790..12704)
DNA (915bp) protein (305aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_872_curated_15
unknown

Not on your lists

12910..13428
DNA (519bp) protein (173aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_872_curated_16
Bacillus megaterium, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13425..15029)
DNA (1605bp) protein (535aa)
endopeptidase (EC:3.4.-.-)
Endopeptidase {ECO:0000313|EMBL:ADE69986.1}; EC=3.4.-.- {ECO:0000313|EMBL:ADE69986.1};; TaxID=545693 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus megaterium (strain ATCC 12872 / QMB1551).;"
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745B85
SCNpilot_cont_1000_p_scaffold_872_curated_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15040..15558
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2YJ11_9RHOB
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
SCNpilot_cont_1000_p_scaffold_872_curated_18
unknown

Not on your lists

15642..16442
DNA (801bp) protein (267aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_872_curated_19
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(16496..17329)
DNA (834bp) protein (278aa)
glutamate racemase (EC:5.1.1.3)
Glutamate racemase id=3937090 bin=GWC2_Deltaproteobacteria_56_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_872_curated_20
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(17367..18503)
DNA (1137bp) protein (379aa)
amiC; N-acetylmuramoyl-L-alanine amidase; K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
Cell wall hydrolase/autolysin n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXU6_9BACT
Cell wall hydrolase/autolysin {ECO:0000313|EMBL:EDY21094.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_872_curated_21
unknown

Not on your lists

18714..18950
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_872_curated_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

18922..19410
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLY5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59113.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_872_curated_23
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19417..20187)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Gallionella sp. SCGC AAA018-N21 RepID=UPI00036718E9
Tax=GWA2_Gallionellales_60_142_curated
SCNpilot_cont_1000_p_scaffold_872_curated_24
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20285..20893
DNA (609bp) protein (203aa)
Transcriptional regulator, XRE family n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RH02_9RHOO
Transcriptional regulator, XRE family {ECO:0000313|EMBL:EGK70206.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
XRE family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_872_curated_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20918..21670)
DNA (753bp) protein (251aa)
Putative pyruvate radical-activating enzyme id=1362750 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
radical SAM domain-containing protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_cont_1000_p_scaffold_872_curated_26
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21645..21824)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q7WX98_CUPNH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAP85991.1}; TaxID=381666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
SCNpilot_cont_1000_p_scaffold_872_curated_27
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21821..23518)
DNA (1698bp) protein (566aa)
Ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:KAI95634.1}; EC=1.17.4.2 {ECO:0000313|EMBL:KAI95634.1};; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
anaerobic ribonucleoside triphosphate reductase (EC:1.17.4.2); K00527 ribonucleoside-triphosphate reductase [EC:1.17.4.2]
Anaerobic ribonucleoside triphosphate reductase n=2 Tax=Rhodospirillum rubrum RepID=G2TGN0_RHORU
SCNpilot_cont_1000_p_scaffold_872_curated_28
RIFOXYC12_FULL_Lentisphaerae_60_16_curated, Lentisphaerae, Bacteria

Not on your lists

24098..25351
DNA (1254bp) protein (418aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IWN1_9BACT
Tax=RIFOXYC12_FULL_Lentisphaerae_60_16_curated
SCNpilot_cont_1000_p_scaffold_872_curated_29
unknown

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25767..26171
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_872_curated_30
unknown

Not on your lists

comp(27394..27615)
DNA (222bp) protein (74aa)

This feature has no annotations

Displaying items 1-30 of 37 in total

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