ggKbase home page

SCNpilot_cont_1000_p_scaffold_764_curated

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_764_curated_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(2..1915)
DNA (1914bp) protein (638aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Lon protease n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XB79_9BACT
ATP-dependent protease La
SCNpilot_cont_1000_p_scaffold_764_curated_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(1912..2316)
DNA (405bp) protein (135aa)
Molecular chaperone (Small heat shock protein)-like protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XB80_9BACT
Molecular chaperone (Small heat shock protein)-like protein {ECO:0000313|EMBL:EEF62765.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative heat shock protein Hsp20
SCNpilot_cont_1000_p_scaffold_764_curated_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

2432..3709
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6C7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18036.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_764_curated_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(3747..9227)
DNA (5481bp) protein (1827aa)
Excinuclease ABC, A subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D774_9BACT
UvrABC system protein A {ECO:0000256|SAAS:SAAS00088996}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
uvrA2; hypothetical protein; K03701 excinuclease ABC subunit A
SCNpilot_cont_1000_p_scaffold_764_curated_5
CG_Dehalo_02, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

9366..10076
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003747759
Zn-dependent hydrolase
Tax=CG_Dehalo_02
SCNpilot_cont_1000_p_scaffold_764_curated_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

10073..11332
DNA (1260bp) protein (420aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0W3_9BACT
SCNpilot_cont_1000_p_scaffold_764_curated_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

11329..12459
DNA (1131bp) protein (377aa)
Peptidase S41 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0W2_9BACT
Peptidase S41 {ECO:0000313|EMBL:EDY19974.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
C-terminal processing peptidase
SCNpilot_cont_1000_p_scaffold_764_curated_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

12527..13792
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6C7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18036.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_764_curated_9
unknown

Not on your lists

comp(13802..14329)
DNA (528bp) protein (176aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_764_curated_10
unknown

Not on your lists

comp(14504..14698)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_764_curated_11
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

14819..15610
DNA (792bp) protein (264aa)
Methyltransferase type 11 n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IVD0_9BACT
Type 11 methyltransferase {ECO:0000313|EMBL:AHF91523.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
methyltransferase domain containing protein
SCNpilot_cont_1000_p_scaffold_764_curated_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(15652..15945)
DNA (294bp) protein (98aa)
alkylphosphonate utilization operon protein PhnA; K06193 phosphonoacetate hydrolase [EC:3.11.1.2]
Alkylphosphonate utilization operon protein PhnA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPC3_9BACT
Alkylphosphonate utilization operon protein PhnA {ECO:0000313|EMBL:EEF58263.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
SCNpilot_cont_1000_p_scaffold_764_curated_13
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(16057..16842)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744D80
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_764_curated_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(16842..17495)
DNA (654bp) protein (218aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
thiE; thiamine monophosphate synthase; K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
Thiamine-phosphate synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYD8_9BACT
SCNpilot_cont_1000_p_scaffold_764_curated_15
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(17486..18355)
DNA (870bp) protein (290aa)
dTDP-glucose pyrophosphorylase n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AXL1_9BACT
Nucleotidyltransferase {ECO:0000313|EMBL:AKC83138.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_764_curated_16
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18493..19005)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000368646C
Uncharacterized protein {ECO:0000313|EMBL:KJV26453.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_764_curated_17
uncultured Verrucomicrobia bacterium, Verrucomicrobia, Bacteria

Not on your lists

19133..19867
DNA (735bp) protein (245aa)
Putative uncharacterized protein n=1 Tax=uncultured Verrucomicrobia bacterium RepID=D2DXS1_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ACO70894.1}; TaxID=156588 species="Bacteria; Verrucomicrobia; environmental samples.;" source="uncultured Verrucomicrobia bacterium.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_764_curated_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

19876..21333
DNA (1458bp) protein (486aa)
Nucleotidyltransferase/DNA polymerase involved in DNA repair-like protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DB63_9BACT
Nucleotidyltransferase/DNA polymerase involved in DNA repair-like protein {ECO:0000313|EMBL:EDY16341.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
DNA repair nucleotidyltransferase/DNA polymerase-like protein; K14161 protein ImuB
SCNpilot_cont_1000_p_scaffold_764_curated_19
uncultured Verrucomicrobia bacterium, Verrucomicrobia, Bacteria

Not on your lists

21317..24403
DNA (3087bp) protein (1029aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; Flags: Fragment;; TaxID=156588 species="Bacteria; Verrucomicrobia; environmental samples.;" source="uncultured Verrucomicrobia bacterium.;"
DNA polymerase III subunit alpha; K14162 error-prone DNA polymerase [EC:2.7.7.7]
DNA polymerase III alpha subunit (Fragment) n=1 Tax=uncultured Verrucomicrobia bacterium RepID=D2DXW4_9BACT
SCNpilot_cont_1000_p_scaffold_764_curated_20
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(24419..25303)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Methylotenera RepID=UPI00035E1C4B
Uncharacterized protein {ECO:0000313|EMBL:AKC83501.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_764_curated_21
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(25551..25982)
DNA (432bp) protein (144aa)
protein tyrosine phosphatase; K03741 arsenate reductase [EC:1.20.4.1]
Protein tyrosine phosphatase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZXF3_OPITP
Protein tyrosine phosphatase {ECO:0000313|EMBL:ACB76948.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
SCNpilot_cont_1000_p_scaffold_764_curated_22
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(25979..27058)
DNA (1080bp) protein (360aa)
Arsenical-resistance protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZXF2_OPITP
arsenical-resistance protein; K03325 arsenite transporter, ACR3 family
Arsenical-resistance protein {ECO:0000313|EMBL:ACB76947.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
SCNpilot_cont_1000_p_scaffold_764_curated_23
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27066..29045)
DNA (1980bp) protein (660aa)
arsA; arsenite-transporting ATPase (EC:3.6.3.16); K01551 arsenite-transporting ATPase [EC:3.6.3.16]
Arsenite-transporting ATPase {ECO:0000313|EMBL:CAL94973.1}; EC=3.6.3.16 {ECO:0000313|EMBL:CAL94973.1};; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
Arsenite-transporting ATPase n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K818_AZOSB
SCNpilot_cont_1000_p_scaffold_764_curated_24
Paenibacillus sp. FSL R5-0345, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29042..29362)
DNA (321bp) protein (107aa)
Arsenical resistance operon trans-acting repressor ArsD n=1 Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0A536_ALKEH
Arsenic resistance operon repressor {ECO:0000313|EMBL:AIQ38000.1}; TaxID=1536770 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R5-0345.;"
arsenical resistance operon trans-acting repressor ArsD
SCNpilot_cont_1000_p_scaffold_764_curated_25
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(29359..29877)
DNA (519bp) protein (173aa)
protein tyrosine phosphatase; K03741 arsenate reductase [EC:1.20.4.1]
Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JDY3_9BACT
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:EDY83026.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
SCNpilot_cont_1000_p_scaffold_764_curated_26
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(29882..30244)
DNA (363bp) protein (121aa)
Transcriptional regulator, ArsR family n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZXF1_OPITP
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ACB76946.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
SCNpilot_cont_1000_p_scaffold_764_curated_27
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

30639..31769
DNA (1131bp) protein (377aa)
Uncharacterized protein id=4674739 bin=GWA2_Ignavibacteriae_55_25 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteriae_55_25 organism_group=Ignavibacteria
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_764_curated_28
unknown

Not on your lists

comp(31814..32404)
DNA (591bp) protein (197aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_764_curated_29
Microcystis aeruginosa, Microcystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

32600..33856
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Microcystis aeruginosa PCC 9807 RepID=I4H708_MICAE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCI17832.1}; TaxID=1160283 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.;" source="Microcystis aeruginosa PCC 9807.;"
SCNpilot_cont_1000_p_scaffold_764_curated_30
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33986..35389
DNA (1404bp) protein (468aa)
fumC; fumarate hydratase (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2] rbh
Fumarate hydratase class II n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XML2_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying items 1-30 of 34 in total

View Taxonomy