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SCNpilot_cont_1000_p_scaffold_2385_curated

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2385_curated_1
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(2..2326)
DNA (2325bp) protein (775aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPZ3_OPITP
CzcA family heavy metal efflux protein; K07239 heavy-metal exporter, HME family
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:ACB77714.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
SCNpilot_cont_1000_p_scaffold_2385_curated_2
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(2331..3116)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPZ2_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB77713.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
SCNpilot_cont_1000_p_scaffold_2385_curated_3
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(3113..4351)
DNA (1239bp) protein (413aa)
Outer membrane efflux protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZYA2_OPITP
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:ACB76248.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
SCNpilot_cont_1000_p_scaffold_2385_curated_4
unknown

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comp(4397..4843)
DNA (447bp) protein (149aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2385_curated_5
unknown

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4887..5480
DNA (594bp) protein (198aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2385_curated_6
GWF2_Lentisphaerae_52_8_curated, Lentisphaerae, Bacteria

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comp(5353..6150)
DNA (798bp) protein (266aa)
Transcriptional regulator, AraC family protein id=4155369 bin=GWF2_Lentisphaerae_52_8 species=Verrucomicrobiae bacterium DG1235 genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
AraC family transcriptional regulator; K07506 AraC family transcriptional regulator
Tax=GWF2_Lentisphaerae_52_8_curated
SCNpilot_cont_1000_p_scaffold_2385_curated_7
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

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6281..7102
DNA (822bp) protein (274aa)
Xylose isomerase domain protein TIM barrel id=3363085 bin=GWF2_Lentisphaerae_49_21 species=unknown genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
xylose isomerase
Tax=GWF2_Lentisphaerae_49_21_curated
SCNpilot_cont_1000_p_scaffold_2385_curated_8
GWF2_Lentisphaerae_52_8_curated, Lentisphaerae, Bacteria

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7117..8238
DNA (1122bp) protein (374aa)
dehydrogenase/oxidoreductase (EC:1.-.-.-); K00540 [EC:1.-.-.-]
Oxidoreductase domain-containing protein id=4155371 bin=GWF2_Lentisphaerae_52_8 species=Paenibacillus mucilaginosus genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
Tax=GWF2_Lentisphaerae_52_8_curated
SCNpilot_cont_1000_p_scaffold_2385_curated_9
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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8346..9326
DNA (981bp) protein (327aa)
acetyl xylan esterase; K01060 cephalosporin-C deacetylase [EC:3.1.1.41]
Acetyl xylan esterase n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QDS2_CATAD
Acetyl xylan esterase {ECO:0000313|EMBL:CDH44504.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
SCNpilot_cont_1000_p_scaffold_2385_curated_10
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9323..9631
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U2ZIX6_PSEAC
Uncharacterized protein {ECO:0000313|EMBL:GAD61445.1}; TaxID=1215092 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes NBRC 14159.;"
cupin domain-containing protein
SCNpilot_cont_1000_p_scaffold_2385_curated_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(9685..10704)
DNA (1020bp) protein (340aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; K02536 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
UDP-3-O-acylglucosamine N-acyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D713_9BACT
SCNpilot_cont_1000_p_scaffold_2385_curated_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(10708..11304)
DNA (597bp) protein (199aa)
Outer membrane chaperone Skp (OmpH) n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D714_9BACT
Outer membrane chaperone Skp (OmpH) {ECO:0000313|EMBL:EDY17665.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hlpA; Outer membrane protein; K06142 outer membrane protein
SCNpilot_cont_1000_p_scaffold_2385_curated_13
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(11366..13672)
DNA (2307bp) protein (769aa)
Outer membrane protein assembly complex, YaeT protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D715_9BACT
Outer membrane protein; K07277 outer membrane protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_2385_curated_14
unknown

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13941..14090
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2385_curated_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(14101..14724)
DNA (624bp) protein (208aa)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
dethiobiotin synthase (EC:6.3.3.3); K01935 dethiobiotin synthetase [EC:6.3.3.3]
ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2A8_9BACT
SCNpilot_cont_1000_p_scaffold_2385_curated_16
unknown

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comp(14721..14870)
DNA (150bp) protein (50aa)

This feature has no annotations

Displaying 16 items

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