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SCNpilot_cont_1000_p_scaffold_1259_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1259_curated_1

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1..195
DNA (195bp) protein (65aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
thyA; thymidylate synthase (EC:2.1.1.45); K00560 thymidylate synthase [EC:2.1.1.45]
Thymidylate synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D396_9BACT
SCNpilot_cont_1000_p_scaffold_1259_curated_2
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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192..644
DNA (453bp) protein (151aa)
dihydrofolate reductase; K00287 dihydrofolate reductase [EC:1.5.1.3]
Dihydrofolate reductase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017452A7
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1259_curated_3
unknown

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comp(728..1126)
DNA (399bp) protein (133aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1259_curated_4
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(1137..2585)
DNA (1449bp) protein (483aa)
nuoN; NADH dehydrogenase subunit N; K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3]
proton-translocating NADH-quinone oxidoreductase, chain N n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017466A7
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1259_curated_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(2582..4045)
DNA (1464bp) protein (488aa)
Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:EDY22411.1}; EC=1.6.99.5 {ECO:0000313|EMBL:EDY22411.1};; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
nuoM; NADH dehydrogenase subunit M; K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3]
Proton-translocating NADH-quinone oxidoreductase, chain M n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CV23_9BACT
SCNpilot_cont_1000_p_scaffold_1259_curated_6
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(4042..5850)
DNA (1809bp) protein (603aa)
nuoL; NADH dehydrogenase subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3]
NADH dehydrogenase subunit L n=1 Tax=Methylacidiphilum fumariolicum SolV RepID=I0K0W4_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1259_curated_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(5850..6173)
DNA (324bp) protein (108aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
NADH-ubiquinone oxidoreductase chain 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit K n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CV19_9BACT
SCNpilot_cont_1000_p_scaffold_1259_curated_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(6170..6661)
DNA (492bp) protein (164aa)
NADH-ubiquinone oxidoreductase subunit J (EC:1.6.5.3); K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3]
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CV18_9BACT
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 {ECO:0000313|EMBL:EDY22406.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_1259_curated_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(6702..7232)
DNA (531bp) protein (177aa)
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
nuoI; NADH dehydrogenase subunit I; K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit I n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CV17_9BACT
SCNpilot_cont_1000_p_scaffold_1259_curated_10
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7325..8425)
DNA (1101bp) protein (367aa)
ABC transporter substrate-binding protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5F193
polar amino acid transport system substrate-binding protein
Polar amino acid transport system substrate-binding protein {ECO:0000313|EMBL:CCA94379.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_1000_p_scaffold_1259_curated_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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8509..10815
DNA (2307bp) protein (769aa)
Non-specific serine/threonine protein kinase {ECO:0000313|EMBL:EDY17009.1}; EC=2.7.11.1 {ECO:0000313|EMBL:EDY17009.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Non-specific serine/threonine protein kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9A6_9BACT
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1259_curated_12
Akkermansia muciniphila CAG:154, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(10812..11720)
DNA (909bp) protein (303aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017446F5
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:CDB55554.1}; TaxID=1263034 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples.;" source="Akkermansia muciniphila CAG:154.;"
SCNpilot_cont_1000_p_scaffold_1259_curated_13
Gynuella sunshinyii, Gynuella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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11852..12421
DNA (570bp) protein (190aa)
HupE/UreJ protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPS2_9BACT
Hydrogenase/urease accessory protein {ECO:0000313|EMBL:AJQ96674.1}; TaxID=1445510 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillales; Gynuella.;" source="Gynuella sunshinyii YC6258.;"
Hydrogenase/urease accessory protein
SCNpilot_cont_1000_p_scaffold_1259_curated_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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12473..13387
DNA (915bp) protein (305aa)
Periplasmic solute binding protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CV64_9BACT
Periplasmic solute binding protein {ECO:0000313|EMBL:EDY22452.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
periplasmic solute-binding protein; K02077 zinc/manganese transport system substrate-binding protein
SCNpilot_cont_1000_p_scaffold_1259_curated_15
unknown

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13388..13813
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1259_curated_16
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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13810..14565
DNA (756bp) protein (252aa)
ABC transporter-related protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CV67_9BACT
ABC transporter-related protein {ECO:0000313|EMBL:EDY22455.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ABC transporter; K09820 manganese/iron transport system ATP-binding protein
SCNpilot_cont_1000_p_scaffold_1259_curated_17
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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14562..15452
DNA (891bp) protein (297aa)
ABC-3 protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CV68_9BACT
ABC-3 protein {ECO:0000313|EMBL:EDY22456.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ABC transporter; K09819 manganese/iron transport system permease protein
SCNpilot_cont_1000_p_scaffold_1259_curated_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(15449..16975)
DNA (1527bp) protein (509aa)
ubiD; 3-polyprenyl-4-hydroxybenzoate decarboxylase; K03182 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-]
UbiD family decarboxylase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCT0_9BACT
UbiD family decarboxylase {ECO:0000313|EMBL:EEF62276.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
SCNpilot_cont_1000_p_scaffold_1259_curated_19
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(16979..18514)
DNA (1536bp) protein (512aa)
FAD dependent oxidoreductase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW90_9BACT
FAD dependent oxidoreductase {ECO:0000313|EMBL:EDY21682.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
putative oxidoreductase
SCNpilot_cont_1000_p_scaffold_1259_curated_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(18539..19849)
DNA (1311bp) protein (437aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:EEF60646.1}; EC=2.7.7.9 {ECO:0000313|EMBL:EEF60646.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
phosphoglucomutase; K01835 phosphoglucomutase [EC:5.4.2.2]
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHR8_9BACT
SCNpilot_cont_1000_p_scaffold_1259_curated_21
RIFOXYD1_FULL_Bdellovibrionales_44_7_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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comp(19890..20495)
DNA (606bp) protein (202aa)
Tax=RIFOXYD1_FULL_Bdellovibrionales_44_7_curated
SCNpilot_cont_1000_p_scaffold_1259_curated_22
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(20571..22340)
DNA (1770bp) protein (590aa)
aspartyl-tRNA synthetase; K01876 aspartyl-tRNA synthetase [EC:6.1.1.12]
aspartyl-tRNA synthase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017468E8
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1259_curated_23
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(22414..23673)
DNA (1260bp) protein (420aa)
Histidine--tRNA ligase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21]
histidyl-tRNA synthetase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746B3F
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1259_curated_24
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23722..24699)
DNA (978bp) protein (326aa)
zinc-binding dehydrogenase family oxidoreductase; K00344 NADPH2:quinone reductase [EC:1.6.5.5]
oxidoreductase, zinc-binding dehydrogenase family protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745889
Alcohol dehydrogenase {ECO:0000313|EMBL:EYR67103.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
SCNpilot_cont_1000_p_scaffold_1259_curated_25
unknown

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comp(24712..25203)
DNA (492bp) protein (164aa)

This feature has no annotations

Displaying 25 items

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