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SCNpilot_cont_1000_p_scaffold_3791_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_3791_curated_1
Desulfococcus multivorans, Desulfococcus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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68..2227
DNA (2160bp) protein (720aa)
general secretory pathway protein E n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A6C
General secretory pathway protein E {ECO:0000313|EMBL:EPR39047.1}; TaxID=1121405 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus.;" source="Desulfococcus multivorans DSM 2059.;"
general secretion pathway protein E; K02454 general secretion pathway protein E
SCNpilot_cont_1000_p_scaffold_3791_curated_2
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(2414..3406)
DNA (993bp) protein (331aa)
glycerate dehydrogenase n=1 Tax=Paenibacillus elgii RepID=UPI000248DA17
Glycerate dehydrogenase {ECO:0000313|EMBL:KEQ25751.1}; TaxID=1501230 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MSt1.;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
SCNpilot_cont_1000_p_scaffold_3791_curated_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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3480..4880
DNA (1401bp) protein (467aa)
FAD linked oxidase domain-containing protein; K00104 glycolate oxidase [EC:1.1.3.15]
FAD linked oxidase domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTR6_9BACT
FAD linked oxidase domain protein {ECO:0000313|EMBL:EDY21954.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_3791_curated_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(4819..5787)
DNA (969bp) protein (323aa)
drug/metabolite exporter n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746344
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV98337.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_1000_p_scaffold_3791_curated_5
Legionella hackeliae, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5952..6479)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B610F5
Uncharacterized protein {ECO:0000313|EMBL:CEK10406.1}; TaxID=449 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella hackeliae.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_3791_curated_6
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6472..7155)
DNA (684bp) protein (228aa)
inh; ThiJ/PfpI family isonitrile hydratase (EC:4.2.1.103)
ThiJ/PfpI domain protein n=2 Tax=Methylobacterium extorquens RepID=A9W1V0_METEP
AraC family transcriptional regulator {ECO:0000313|EMBL:KJC36289.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
SCNpilot_cont_1000_p_scaffold_3791_curated_7
unknown

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comp(7160..7672)
DNA (513bp) protein (171aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3791_curated_8
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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7733..8578
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AE14_NITEC
hypothetical protein; K06889
Tax=RBG_16_Anaeromyxobacter_69_14_curated
SCNpilot_cont_1000_p_scaffold_3791_curated_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(8636..9889)
DNA (1254bp) protein (418aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
isocitrate dehydrogenase; K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Isocitrate dehydrogenase [NADP] n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ05_9BACT
SCNpilot_cont_1000_p_scaffold_3791_curated_10

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comp(9966..10676)
DNA (711bp) protein (237aa)
conserved putative membrane protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744DBB
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49202.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PA-phosphatase-like phosphoesterase
SCNpilot_cont_1000_p_scaffold_3791_curated_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(10694..11536)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8P9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY17271.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_3791_curated_12
unknown

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comp(11885..12214)
DNA (330bp) protein (110aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3791_curated_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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12330..12683
DNA (354bp) protein (118aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8P7_9BACT
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:EDY17269.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
tolR; protein TolR; K03560 biopolymer transport protein TolR
SCNpilot_cont_1000_p_scaffold_3791_curated_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

12683..13648
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8P6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY17268.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
filamentous hemagglutinin family outer membrane protein
Displaying 14 items

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