ggKbase home page

SCNpilot_cont_1000_p_scaffold_1100_curated

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1100_curated_1
unknown

Not on your lists

comp(3..116)
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1100_curated_2

Not on your lists

297..1610
DNA (1314bp) protein (438aa)
chromate transporter n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017465F8
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48947.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
chromate ion transporter family chromate transporter; K07240 chromate transporter
SCNpilot_cont_1000_p_scaffold_1100_curated_3
unknown

Not on your lists

comp(1585..2403)
DNA (819bp) protein (273aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1100_curated_4
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3511..4206)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZAM4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EXI88899.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
SCNpilot_cont_1000_p_scaffold_1100_curated_5
RBG_19FT_COMBO_Chloroflexi_47_9_curated, Chloroflexi, Bacteria

Not on your lists

4568..5128
DNA (561bp) protein (187aa)
PAS domain S-box n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) RepID=K9RZ52_SYNP3
PAS domain-containing protein
Tax=RBG_19FT_COMBO_Chloroflexi_47_9_curated
SCNpilot_cont_1000_p_scaffold_1100_curated_6
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5125..5778
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YBQ1_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP41766.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
SCNpilot_cont_1000_p_scaffold_1100_curated_7
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(5787..6521)
DNA (735bp) protein (245aa)
Tax=RBG_16_Planctomycetes_55_9_curated
SCNpilot_cont_1000_p_scaffold_1100_curated_8
unknown

Not on your lists

comp(6523..7317)
DNA (795bp) protein (265aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1100_curated_9
unknown

Not on your lists

comp(7314..8051)
DNA (738bp) protein (246aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1100_curated_10
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(8323..9459)
DNA (1137bp) protein (379aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D4L2_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1100_curated_11
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9456..10754)
DNA (1299bp) protein (433aa)
Amino acid permease-associated protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B5T2_9RHIZ
amino acid permease-associated protein
Amino acid permease-associated protein {ECO:0000313|EMBL:AGK57577.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_1000_p_scaffold_1100_curated_12

Not on your lists

comp(10775..13183)
DNA (2409bp) protein (803aa)
glycoside hydrolase; K05349 beta-glucosidase [EC:3.2.1.21]
Glycoside hydrolase family 3 protein n=1 Tax=uncultured bacterium 253 RepID=E3T742_9BACT
Glycoside hydrolase family 3 protein {ECO:0000313|EMBL:ADC36136.1}; TaxID=698385 species="Bacteria; environmental samples.;" source="uncultured bacterium 253.;"
SCNpilot_cont_1000_p_scaffold_1100_curated_13
Bacillus sp. SG-1, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13250..13696)
DNA (447bp) protein (149aa)
ADP-ribose pyrophosphatase n=1 Tax=Bacillus sp. SG-1 RepID=A6CI01_9BACI
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EDL66271.1}; TaxID=161544 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. SG-1.;"
pyrophosphohydrolase, NUDIX family
SCNpilot_cont_1000_p_scaffold_1100_curated_14
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13754..14533
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D5H5_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:KGM00666.1}; TaxID=1408250 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1100_curated_15
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(14508..14789)
DNA (282bp) protein (94aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NM89_ROSCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABU58651.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
SCNpilot_cont_1000_p_scaffold_1100_curated_16
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(14831..15808)
DNA (978bp) protein (326aa)
ABC transporter-related protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVW4_9BACT
ABC transporter-related protein {ECO:0000313|EMBL:EDY21556.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ABC transporter
SCNpilot_cont_1000_p_scaffold_1100_curated_17
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(15805..16257)
DNA (453bp) protein (151aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
RNA methyltransferase; K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3F6_9BACT
SCNpilot_cont_1000_p_scaffold_1100_curated_18
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(16272..19382)
DNA (3111bp) protein (1037aa)
Protein translocase subunit SecA n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6C4_9BACT
secA; preprotein translocase subunit SecA (ATPase, RNA helicase); K03070 preprotein translocase subunit SecA
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1100_curated_19
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

19423..21132
DNA (1710bp) protein (570aa)
4-alpha-glucanotransferase {ECO:0000313|EMBL:EDY18518.1}; EC=2.4.1.25 {ECO:0000313|EMBL:EDY18518.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
malQ; 4-alpha-glucanotransferase; K00705 4-alpha-glucanotransferase [EC:2.4.1.25]
4-alpha-glucanotransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D4R5_9BACT
SCNpilot_cont_1000_p_scaffold_1100_curated_20
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

21195..21542
DNA (348bp) protein (116aa)
Histone family protein DNA-binding protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D775_9BACT
histone family protein DNA-binding protein; K04764 integration host factor subunit alpha
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1100_curated_21
unknown

Not on your lists

22151..22570
DNA (420bp) protein (140aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1100_curated_22
unknown

Not on your lists

22803..23555
DNA (753bp) protein (251aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1100_curated_23
unknown

Not on your lists

23515..23796
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1100_curated_24
unknown

Not on your lists

23849..24487
DNA (639bp) protein (213aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1100_curated_25
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

24639..25604
DNA (966bp) protein (322aa)
Inosine/uridine-preferring nucleoside hydrolase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZWJ4_OPITP
inosine/uridine-preferring nucleoside hydrolase
Inosine/uridine-preferring nucleoside hydrolase {ECO:0000313|EMBL:ACB73318.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
SCNpilot_cont_1000_p_scaffold_1100_curated_26
GWF2_Lentisphaerae_52_8_curated, Lentisphaerae, Bacteria

Not on your lists

25672..26661
DNA (990bp) protein (330aa)
Putative oxidoreductase id=4261365 bin=GWF2_Lentisphaerae_52_8 species=Phycisphaera mikurensis genus=Phycisphaera taxon_order=Phycisphaerales taxon_class=Phycisphaerae phylum=Planctomycetes tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
phosphoglycerate dehydrogenase-like oxidoreductase
Tax=GWF2_Lentisphaerae_52_8_curated
SCNpilot_cont_1000_p_scaffold_1100_curated_27
Anabaena cylindrica, Anabaena, Nostocales, Cyanobacteria, Bacteria

Not on your lists

26928..27488
DNA (561bp) protein (187aa)
Nicotinamide mononucleotide transporter PnuC n=1 Tax=Anabaena cylindrica (strain ATCC 27899 / PCC 7122) RepID=K9Z8Z2_ANACC
nicotinamide mononucleotide transporter PnuC
Nicotinamide mononucleotide transporter PnuC {ECO:0000313|EMBL:AFZ55668.1}; TaxID=272123 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena.;" source="Anabaena cylindrica (strain ATCC 27899 / PCC 7122).;"
SCNpilot_cont_1000_p_scaffold_1100_curated_28
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

27473..28483
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI00037D3A95
Cytidyltransferase-related domain protein {ECO:0000313|EMBL:KKT76996.1}; TaxID=1619057 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_44_7.;"
cytidyltransferase-related domain protein
SCNpilot_cont_1000_p_scaffold_1100_curated_29
unknown

Not on your lists

28654..28755
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1100_curated_30
unknown

Not on your lists

comp(29113..29559)
DNA (447bp) protein (149aa)

This feature has no annotations

Displaying items 1-30 of 40 in total

View Taxonomy